PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY65986.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 79aa    MW: 8872.27 Da    PI: 10.1423
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY65986.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF473.3e-15250149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k+ienk  r +tfskR  gi KKA+ L +L   ++a+++fs++gk y +
  GAY65986.1  2 KKIENKYDRMITFSKRISGIYKKASKLVTLPRGDIAIVVFSPSGKPYSF 50
                78*******************************************8887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    
MKKIENKYDR MITFSKRISG IYKKASKLVT LPRGDIAIVV FSPSGKPYSF GHPSIEAVAN  60
HFLGLDQPPN DNNHPLFEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-19M-type_MADS family protein