PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY66173.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 757aa MW: 83507.3 Da PI: 4.3648

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY66173.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.7	4.6e-12	610	652	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW+++E el+++a++q+G++ + I + ++ gRt+ q+k+++ k GAY66173.1 610 VRWSKQETELFYEAIRQFGTD-LSMIQQLFP-GRTRQQVKLKYKK 652 69*****************.*****.*********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence
MVLVEIRTQL AETPYSFLAI FSTRSSPLGQ TSYMDLDADL FADESGPAVN HVRGRFQPKA 60 KPRPRNERTA SVDVIDKDSQ LLDPIVSSVP ASEVVRTVEQ FKENESSENA LHSEVTASDG 120 CGDLLSSFQK AAGQNADVLS GLESLNDFES QSSNGTEMPA LIVSDYNGGE AVVFEGLSSD 180 NNAAPGVCDA AQAETSADMF LTQDPISCGQ AALTNNAGGI PVDDARLERE VQQDGAFPDL 240 NCLDSTSEEA VASGQRAAKY KPRPQVRTES EKFNISSVPH PDAVESVMHS PNAQFVSSGS 300 QFMSEGSIPA SVPEDCFDYS SIDLGGTTPP DPTSSEFPVN EELTNFAETS FTDAAASGDM 360 QHEDFPATTE SQSAMGKETK ASTVLSLSQR LIESSQAGKE TEVGKLLRQL RKGVVVPELV 420 DEPDNEARND GSFSAEPPSN AVDEDEGDVG GNSAEKTSEK KRAPRKSKET VSENGKTVRK 480 RKKANEASDT DKNPPKKFSH STRRKRRIVN KELLQTPEDE IDPQKVPMKD LILLAEYKER 540 LASKEAKATG TPLKNQSAEH SSREEDYHNE DETFASEQDN GSFGDPATDR VQPRVHFFNY 600 QSFMKKTPTV RWSKQETELF YEAIRQFGTD LSMIQQLFPG RTRQQVKLKY KKEEREHPLR 660 LTEALTNRAK DHSHFEKVIE QLQQFAAQAA QDAKEDDSAS MIDEDLEELN PQYNDKAEKV 720 EQDQNAEADV NEVHSPMKDD ENADDYDDIW NSYKSEF

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence

MVLVEIRTQL AETPYSFLAI FSTRSSPLGQ TSYMDLDADL FADESGPAVN HVRGRFQPKA  60
KPRPRNERTA SVDVIDKDSQ LLDPIVSSVP ASEVVRTVEQ FKENESSENA LHSEVTASDG  120
CGDLLSSFQK AAGQNADVLS GLESLNDFES QSSNGTEMPA LIVSDYNGGE AVVFEGLSSD  180
NNAAPGVCDA AQAETSADMF LTQDPISCGQ AALTNNAGGI PVDDARLERE VQQDGAFPDL  240
NCLDSTSEEA VASGQRAAKY KPRPQVRTES EKFNISSVPH PDAVESVMHS PNAQFVSSGS  300
QFMSEGSIPA SVPEDCFDYS SIDLGGTTPP DPTSSEFPVN EELTNFAETS FTDAAASGDM  360
QHEDFPATTE SQSAMGKETK ASTVLSLSQR LIESSQAGKE TEVGKLLRQL RKGVVVPELV  420
DEPDNEARND GSFSAEPPSN AVDEDEGDVG GNSAEKTSEK KRAPRKSKET VSENGKTVRK  480
RKKANEASDT DKNPPKKFSH STRRKRRIVN KELLQTPEDE IDPQKVPMKD LILLAEYKER  540
LASKEAKATG TPLKNQSAEH SSREEDYHNE DETFASEQDN GSFGDPATDR VQPRVHFFNY  600
QSFMKKTPTV RWSKQETELF YEAIRQFGTD LSMIQQLFPG RTRQQVKLKY KKEEREHPLR  660
LTEALTNRAK DHSHFEKVIE QLQQFAAQAA QDAKEDDSAS MIDEDLEELN PQYNDKAEKV  720
EQDQNAEADV NEVHSPMKDD ENADDYDDIW NSYKSEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	460	482	KKRAPRKSKETVSENGKTVRKRK
2	476	482	KTVRKRK
3	479	483	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	8e-52	MYB_related family protein