PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY66791.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 463aa MW: 50466.2 Da PI: 7.3576

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY66791.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.5	3.5e-36	151	267	2	108
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec.....eaesssssasnsss 87 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++ ++++ + + +ss+ + +++s+ GAY66791.1 151 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELppwqpstsNNNA---AteaepNMGSSEMAIQEQSE 246 79**************************************************************888764432222...22234444455555555555 PP TCP 88 gkaaksaakskksqksaasal 108 ++ +++ +++ +++a++ + GAY66791.1 247 SSGYSFQIHRQLGDHNANNDS 267 544455545555555554444 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MSYNGGGGVG ACNLENAMSE FLLGSAVVCS NRSTGFQGDG SWSMKSSKHT TTTTATTARH 60 PQKPTHQITN LIPQETTLQQ NPETASTNTT YYQSQQPFGQ AIINSSHQTQ VPNNKESLED 120 YPNYNRVRRM GMKGTEGEIV QVEGGHIVRS TGRKDRHSKV YTSKGPRDRR VRLSAHTAIQ 180 FYDVQDRLGY DRPSKAVDWL IKKAKSSIDK LAELPPWQPS TSNNNAATEA EPNMGSSEMA 240 IQEQSESSGY SFQIHRQLGD HNANNDSTFM SPPPLDTDAI ADTIKSFFPT STTASAINFQ 300 NYPAGILTRS ANPTEDLGLS LHTAFQDPGL IHGQSRGDTS HTTSADQTPF AGSAPVGFDS 360 SFQRMLAWNN ETSAETRGTG GFLFNSSSLS QQAALAFRGP LQSSFTQSVR AWDDIPVGKT 420 HEIQQSSVFG MPAGFNIPAR IHGQDHHQHS NRPSSSSPNN SHR

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MSYNGGGGVG ACNLENAMSE FLLGSAVVCS NRSTGFQGDG SWSMKSSKHT TTTTATTARH  60
PQKPTHQITN LIPQETTLQQ NPETASTNTT YYQSQQPFGQ AIINSSHQTQ VPNNKESLED  120
YPNYNRVRRM GMKGTEGEIV QVEGGHIVRS TGRKDRHSKV YTSKGPRDRR VRLSAHTAIQ  180
FYDVQDRLGY DRPSKAVDWL IKKAKSSIDK LAELPPWQPS TSNNNAATEA EPNMGSSEMA  240
IQEQSESSGY SFQIHRQLGD HNANNDSTFM SPPPLDTDAI ADTIKSFFPT STTASAINFQ  300
NYPAGILTRS ANPTEDLGLS LHTAFQDPGL IHGQSRGDTS HTTSADQTPF AGSAPVGFDS  360
SFQRMLAWNN ETSAETRGTG GFLFNSSSLS QQAALAFRGP LQSSFTQSVR AWDDIPVGKT  420
HEIQQSSVFG MPAGFNIPAR IHGQDHHQHS NRPSSSSPNN SHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	2e-72	TCP family protein