PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY66956.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 28881.7 Da    PI: 7.9851
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY66956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ien   rqvtfskRrng+lKKA+ELSvLCda+v vi+fsstgklye+ss
  GAY66956.1  9 KKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSS 59
                68***********************************************96 PP
2K-box55.32.9e-199417618100
       K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 + el+ Lk+e+  L+    ++ G++L+ Ls+keLqqLe+qL +++ ++++ K+++lleqi++++ +e+++  en++Lrk++ee
  GAY66956.1  94 SAELNALKDEYARLRLAYMRMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEE 176
                 689************999**************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MGRGKIEIKK IENLNSRQVT FSKRRNGLLK KAKELSVLCD ADVGVIVFSS TGKLYEFSSS  60
SMEHILSRYS KGIDLECQTN RNEEHGVPEL PPKSAELNAL KDEYARLRLA YMRMNGQELD  120
GLSFKELQQL EHQLSEGMLS VKDMKEQVLL EQIRRSRLME QKAMLENETL RKQMEELRRS  180
SSRSPLVEFD PLERRFSFTK LKADHCGCTS NENEDDHSDT SLHLGLSSEV RRKRKAPKIE  240
STGNDSGSQV ASD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.16e-70MIKC_MADS family protein