PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY67320.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 564aa    MW: 64076 Da    PI: 10.2448
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY67320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06515538226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 k+ lC+++ + G C +Gd+CkF H 
  GAY67320.1 515 KQQLCPYYPK-GRCYFGDNCKFLHE 538
                 789*******.*************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    
MAPKQLNSCQ GHIVTKKELL PCPVDRKGKT SKRVHFERNV IREVSGFSPY EKMIDALLKV  60
GKDKKALKLA KRKLCTYERA KMKHGEMSNV LCRMRATGGG KKKKRKQKSS ASMAAPESEQ  120
VIFIEAGDDE YSTNSGGSDL GYDSDLDPSY SPLEDTHATF SKLSIGKKSK SRIGKDLDVG  180
VDEIEEKVIQ KIIEAGQQEK LKVEQCKVYL RNNGLRLTGN KPTLIQRIKE HLEISNGGGE  240
RRYPISSFVL DCKGDACTGD VVMFKQNVYK MFNIAACSAS GPPCGKRIVA GRIVKESYGA  300
AKQQHTFTIE VLWSKGEKPL PPLHPLLIKG RNLYRLKILR QRWEDEGERH KVLMEKHSKG  360
EIRIHGKEKR KLLKANRMSI NQVPKSCQSQ MNLIVTEKVE ILSQQQLALN MDSNQMKNGP  420
QQLSVQPQKP SLSVDHRKLA AQPQLSADSK KAAKLLSQLV EQELAVMPNN CQTQVPQDPI  480
VKLRSIREAP INRQRLKSIN HHPPTCPPQE QSCMKQQLCP YYPKGRCYFG DNCKFLHEQR  540
DNGDQRREYR WHHGLPRQFE RREN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106KKKKRK