PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY68148.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 219aa    MW: 25302.5 Da    PI: 8.2512
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY68148.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.4e-074766322
                S---SGGGGTS--TTTTT-S CS
     zf-CCCH  3 telCrffartGtCkyGdrCk 22
                 + C+f+++tG C++G rC+
  GAY68148.1 47 KAYCPFHLKTGACRFGQRCS 66
                578****************6 PP
2zf-CCCH22.61.9e-07148174125
                 --S---SGGGGTS..--TTTTT-SS-S CS
     zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaH 25 
                 +k ++C  ++++   tC++G  C+F+H
  GAY68148.1 148 WKIAICGEYMKSRlkTCSRGMACNFIH 174
                 7889*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MEDNECRDGR KKDVDRPTSN PLPPQSEAFA DHQNAQQALE TVAQQDKAYC PFHLKTGACR  60
FGQRCSIVHF YPDKSCTLLI KNMYNGLGLA WEQDERLEVC RNGSSHLRGN VYVHYKSLES  120
AVLAYHSVNG RYFTGKQITC EFINVTRWKI AICGEYMKSR LKTCSRGMAC NFIHYFRNPS  180
GDYEWADWDK PPPRYWVKKM AALFGYSDES GTWNQERLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-113C3H family protein