PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY68151.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 254aa    MW: 29524.8 Da    PI: 9.4285
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY68151.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.3e-07100119322
                 S---SGGGGTS--TTTTT-S CS
     zf-CCCH   3 telCrffartGtCkyGdrCk 22 
                  + C+f+++tG C++G rC+
  GAY68151.1 100 KAYCPFHLKTGACRFGQRCS 119
                 578****************6 PP
2zf-CCCH22.32.3e-07183209125
                 --S---SGGGGTS..--TTTTT-SS-S CS
     zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaH 25 
                 +k ++C  ++++   tC++G  C+F+H
  GAY68151.1 183 WKIAICGEYMKSRlkTCSRGMACNFIH 209
                 7889*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MAGRSYDMFS EHREFRGEKR MNVIRMMIEN MLKKGLQKLY GKEMRLLSGR KRVPKKDANP  60
LSKKEDVDRP TSNPLPPQSE AFADHQNAQQ ALETVAQQDK AYCPFHLKTG ACRFGQRCSI  120
VHFYPDKSCT LLIKNMYNGL GLAWEQDERL ESLESAVLAY HSVNGRYFTG KQITCEFINV  180
TRWKIAICGE YMKSRLKTCS RGMACNFIHY FRNPSGDYEW ADWDKPPPRY WVKKMAALFG  240
YSDESGTWNQ ERLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-100C3H family protein