PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY69280.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 349aa MW: 38485.7 Da PI: 7.4987

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY69280.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	87	111	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ GtC+y +C+FaH+ GAY69280.1 87 FKTKLCCKFRN-GTCPYITNCNFAHS 111 69*******.***********8 PP
2	zf-CCCH	17.4	7.9e-06	162	187	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yG++C+F H+ GAY69280.1 162 YKGRHCKKFYTEEGCPYGENCTFLHD 187 78888********************7 PP
3	zf-CCCH	42.7	9e-14	229	254	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg GAY69280.1 229 WKTRICNKWELTGYCPFGNKCHFAHG 254 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MSYSRDSSEN VVHIIVGNGA PEHWIPNPND SSVWATEDDY PDDPPSISNS NCQSQTRSNS 60 EQPPNKKSRN GSQDVNSKSK AIGKMFFKTK LCCKFRNGTC PYITNCNFAH SIEELRRPPP 120 NWQEIVAAHE EERASTNEIP REEFQIPSIV STNFAVETQR SYKGRHCKKF YTEEGCPYGE 180 NCTFLHDEQS KNRESVAISL GPGGYGGGGA AAAAAGNNIG VSNVKPSNWK TRICNKWELT 240 GYCPFGNKCH FAHGIQELHR FGGGLLESEN KDSSAAPSDA KLVGVPSKTP VDTVVASVTS 300 VPHADVYHMG VPSQRSSIVV QRPGQRSHKK WKGPDKISRI YGDWIDDIE

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MSYSRDSSEN VVHIIVGNGA PEHWIPNPND SSVWATEDDY PDDPPSISNS NCQSQTRSNS  60
EQPPNKKSRN GSQDVNSKSK AIGKMFFKTK LCCKFRNGTC PYITNCNFAH SIEELRRPPP  120
NWQEIVAAHE EERASTNEIP REEFQIPSIV STNFAVETQR SYKGRHCKKF YTEEGCPYGE  180
NCTFLHDEQS KNRESVAISL GPGGYGGGGA AAAAAGNNIG VSNVKPSNWK TRICNKWELT  240
GYCPFGNKCH FAHGIQELHR FGGGLLESEN KDSSAAPSDA KLVGVPSKTP VDTVVASVTS  300
VPHADVYHMG VPSQRSSIVV QRPGQRSHKK WKGPDKISRI YGDWIDDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-137	C3H family protein