PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY69383.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

M-type_MADS

Protein Properties

Length: 106aa MW: 11956.7 Da PI: 11.0624

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY69383.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	57.4	1.8e-18	15	61	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krien+ r +tfskRr gi KKA+EL +L++ e+a+++fs++gk + GAY69383.1 15 KRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPF 61 79******************************************955 PP

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence
MAAKKTKGRQ KIQMKRIENE DGRLITFSKR RSGIYKKASE LVTLTGSEIA ILVFSQSGKP 60 FSFGHPSIEA VANRFMGLNQ PANDNTHPLV EAHRQVRINE LNQQHI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	1e-32	M-type_MADS family protein