PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG43494.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 408aa MW: 44830.2 Da PI: 9.4053

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG43494.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.4	4.8e-10	41	113	2	67
trihelix 2 WtkqevlaLiearremeerlrrg.......klkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 W+ ++ +Li+a+r+ + +l+++ ++++ +W +v +++ + + r +C +kw+nl +++kki + GBG43494.1 41 WSVDHMVTLIRAKRDQDAQLQAAghxfarmQSREWKWLDVRERLLKVXVXRRTDKCGKKWBNLMQQFKKIHTF 113 999*********9999999753333333699**********************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MGGRGGRGRA STNVGRRWKR PSATSADAEG EGDGEGGRNF WSVDHMVTLI RAKRDQDAQL 60 QAAGHXFARM QSREWKWLDV RERLLKVXVX RRTDKCGKKW BNLMQQFKKI HTFMGMSGKE 120 DFFQLTSQQR AEKGFSFNMD RAVYEEVKGA KERSHTISPS NVADTGGAGG VQLPSAQSAT 180 XKSVGDGDXA GDGNDEDDSS AXGASQRTGS PAGFGKRKNV RQQTFEVHGE AWGVDGIDDG 240 EREHEAMRGD GEXEHEAMRG DEEREQVTML HSNSAVRVVV VSSSSPSSSS VFWAMMNTRS 300 GKGKRERDSQ KTKAAGVVKW GRHQAKKPKA SSDCALVIGR SAREEWVTEA SSGQDDDFES 360 EAETFHGRKA MKHPQTHPRG RARIADPNGS ASAAYLVRTA DPILHEFS

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MGGRGGRGRA STNVGRRWKR PSATSADAEG EGDGEGGRNF WSVDHMVTLI RAKRDQDAQL  60
QAAGHXFARM QSREWKWLDV RERLLKVXVX RRTDKCGKKW BNLMQQFKKI HTFMGMSGKE  120
DFFQLTSQQR AEKGFSFNMD RAVYEEVKGA KERSHTISPS NVADTGGAGG VQLPSAQSAT  180
XKSVGDGDXA GDGNDEDDSS AXGASQRTGS PAGFGKRKNV RQQTFEVHGE AWGVDGIDDG  240
EREHEAMRGD GEXEHEAMRG DEEREQVTML HSNSAVRVVV VSSSSPSSSS VFWAMMNTRS  300
GKGKRERDSQ KTKAAGVVKW GRHQAKKPKA SSDCALVIGR SAREEWVTEA SSGQDDDFES  360
EAETFHGRKA MKHPQTHPRG RARIADPNGS ASAAYLVRTA DPILHEFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-05	Trihelix family protein