PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG58849.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

HD-ZIP

Protein Properties

Length: 368aa MW: 39778.1 Da PI: 5.1739

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG58849.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.6e-19	54	106	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t++q++ Le+ Fe++++++ e++ +LA++l L+ rqV vWFqNrRa++k GBG58849.1 54 KRRLTADQVHSLERNFEMENKLDPERKMQLARELCLQPRQVAVWFQNRRARWK 106 4589************************************************9 PP
2	HD-ZIP_I/II	120.5	8.6e-39	52	142	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 e+krrl+++qv++LE++Fe+e+kL+perK++lareL lqprqvavWFqnrRAR+ktkqlE+d++aLk ++d+l++ene+L+ ev++L + l GBG58849.1 52 ERKRRLTADQVHSLERNFEMENKLDPERKMQLARELCLQPRQVAVWFQNRRARWKTKQLERDHDALKCKIDQLQAENETLRMEVRRLSALL 142 69************************************************************************************99765 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MGTGTQKRTI YNLYEQGGGH VANGAPTAPT AAGALAGDHQ SERVDEVEAP AERKRRLTAD 60 QVHSLERNFE MENKLDPERK MQLARELCLQ PRQVAVWFQN RRARWKTKQL ERDHDALKCK 120 IDQLQAENET LRMEVRRLSA LLRVKSEYLD GHREGSPLSG ANGASDLGEV VIPVTAAMTV 180 AENLAFGSSC KGREEKPSSS SPLCLLGRNQ IGTPSSLAEL ADSGSGASGI GASLHVSTGV 240 VGGGPSVVRC DSCNSIKLEK DVKDHKDTSS TSSHSSEVLD LDASHLECSA TTGRGGRYLS 300 HSHSNSTLDS LLSASDDDPH SLSFSTDNSV ETIMDDPRGP FEGESAPPVV PFFISPGEDM 360 DMPWWEWP

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MGTGTQKRTI YNLYEQGGGH VANGAPTAPT AAGALAGDHQ SERVDEVEAP AERKRRLTAD  60
QVHSLERNFE MENKLDPERK MQLARELCLQ PRQVAVWFQN RRARWKTKQL ERDHDALKCK  120
IDQLQAENET LRMEVRRLSA LLRVKSEYLD GHREGSPLSG ANGASDLGEV VIPVTAAMTV  180
AENLAFGSSC KGREEKPSSS SPLCLLGRNQ IGTPSSLAEL ADSGSGASGI GASLHVSTGV  240
VGGGPSVVRC DSCNSIKLEK DVKDHKDTSS TSSHSSEVLD LDASHLECSA TTGRGGRYLS  300
HSHSNSTLDS LLSASDDDPH SLSFSTDNSV ETIMDDPRGP FEGESAPPVV PFFISPGEDM  360
DMPWWEWP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	57	ERKRRL
2	101	109	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-36	HD-ZIP family protein