PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG58912.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1027aa MW: 114657 Da PI: 7.8542

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG58912.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.3	3e-11	386	462	2	71
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W +e l+L++ +r ++++++ r k ++ +W ++s++mr++g+ r C ++wen+ + ykk+ e+ek+ GBG58912.1 386 WDLNESLVLVQCKRdqedylaNVGSNFARLKTEEWKWTDISNRMRQQGVMRDWDSCMKRWENVIGHYKKVLEREKES 462 899999******4444444444455556899*************************************99973 PP

Sequence ? help Back to Top
Protein Sequence Length: 1027 aa Download sequence
MRRCCVSLHD RCCAEEQTGR LQRPDAVLCV LRHGSSESRG QHKVHDHGGC VHCPLPCCRV 60 LTTHVHMADL LRKTALLALL LFALLTVLVV QLWQLGRRAA VQHQPKSSKK KVRFVGAEKS 120 MGDYRSGAGR EHGMEGAGFT NGTDVREHRF DPALYSHLPS WQQPLPDDNH WEPPSSTLPL 180 GWGLTLTSYD TVGIPHRRAS SLGPMSALLG KVREGGGHPL DLHLSPSCSM HVSRTLIVDH 240 SSDGRRPMRV ATDVPTKGLS SASVNPQQEV AMKNIGAAAA DSVQRGVTGG TTAAESLPVI 300 ERIIARVSNM RATGQGEQGG VGNAGCEEEG EVDDDDEDDS DTDEEEEDGV QEVTARGGKK 360 KGSNGHGKGK AKKGGEGGGG NRRGLWDLNE SLVLVQCKRD QEDYLANVGS NFARLKTEEW 420 KWTDISNRMR QQGVMRDWDS CMKRWENVIG HYKKVLEREK ESGVQSFFTL TAKQSKQLGY 480 KFTMDQMVYD AIDGMQQGNQ AIHLPNLADS GIPQPQQSQQ GEQSHVHGPP ATGETSASEN 540 GEGEGGDGCG TRSSGSAPHG KRKNARQLAF DSVTDVMKTH STVVADSVDR ASKRPCEVIK 600 RQCDIMEREA MMQERQCEVL DAGQRMLCDA LLKIASAFVF RESMDVVVAL RGRIAGRTVA 660 FYEMRHHRDK DCGRAFDFVH TVTRYEVRHF EVDDNERACL RLTVGYGFAR GLLTHVVAFA 720 TKVGDAIPDR WDFGVDVLAD LVDLLVSNVA MEFNDRLDKA AANCWAAGNT RPQQQQFQQQ 780 TSQKHDDDET SEMKAYFRKK IHKQKLEEEK REKEEEERRR RQNEERKEAD RLRELEAREA 840 RLEAKLLRLI SQHTKTVSIP APHIEKKKSP RTKARMLREI RSYLDESKNE SDEVKEEAGR 900 LVDAIEKRKG KHKINGGEAW LSNMKMRASK FTPIDIDDLP DELWTPPTRK RDGRNDAREE 960 NILEFALDLH QKWSAIKAPE LKKICNKESI KWTKKETAIT ELVRCRTKLV YGEGGTGNQG 1020 ATSLSGK

Sequence ? help Back to Top

Protein Sequence Length: 1027 aa Download sequence

MRRCCVSLHD RCCAEEQTGR LQRPDAVLCV LRHGSSESRG QHKVHDHGGC VHCPLPCCRV  60
LTTHVHMADL LRKTALLALL LFALLTVLVV QLWQLGRRAA VQHQPKSSKK KVRFVGAEKS  120
MGDYRSGAGR EHGMEGAGFT NGTDVREHRF DPALYSHLPS WQQPLPDDNH WEPPSSTLPL  180
GWGLTLTSYD TVGIPHRRAS SLGPMSALLG KVREGGGHPL DLHLSPSCSM HVSRTLIVDH  240
SSDGRRPMRV ATDVPTKGLS SASVNPQQEV AMKNIGAAAA DSVQRGVTGG TTAAESLPVI  300
ERIIARVSNM RATGQGEQGG VGNAGCEEEG EVDDDDEDDS DTDEEEEDGV QEVTARGGKK  360
KGSNGHGKGK AKKGGEGGGG NRRGLWDLNE SLVLVQCKRD QEDYLANVGS NFARLKTEEW  420
KWTDISNRMR QQGVMRDWDS CMKRWENVIG HYKKVLEREK ESGVQSFFTL TAKQSKQLGY  480
KFTMDQMVYD AIDGMQQGNQ AIHLPNLADS GIPQPQQSQQ GEQSHVHGPP ATGETSASEN  540
GEGEGGDGCG TRSSGSAPHG KRKNARQLAF DSVTDVMKTH STVVADSVDR ASKRPCEVIK  600
RQCDIMEREA MMQERQCEVL DAGQRMLCDA LLKIASAFVF RESMDVVVAL RGRIAGRTVA  660
FYEMRHHRDK DCGRAFDFVH TVTRYEVRHF EVDDNERACL RLTVGYGFAR GLLTHVVAFA  720
TKVGDAIPDR WDFGVDVLAD LVDLLVSNVA MEFNDRLDKA AANCWAAGNT RPQQQQFQQQ  780
TSQKHDDDET SEMKAYFRKK IHKQKLEEEK REKEEEERRR RQNEERKEAD RLRELEAREA  840
RLEAKLLRLI SQHTKTVSIP APHIEKKKSP RTKARMLREI RSYLDESKNE SDEVKEEAGR  900
LVDAIEKRKG KHKINGGEAW LSNMKMRASK FTPIDIDDLP DELWTPPTRK RDGRNDAREE  960
NILEFALDLH QKWSAIKAPE LKKICNKESI KWTKKETAIT ELVRCRTKLV YGEGGTGNQG  1020
ATSLSGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	368	374	KGKAKKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-07	Trihelix family protein