PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG59122.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 795aa MW: 87466.6 Da PI: 6.6798

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG59122.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.5	9.5e-10	79	152	2	68
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 W+ + ++L++ +r + ++++r k k+ +We+ sk+m+ g ++ + C +kw+nl + ykki++ + GBG59122.1 79 WSAENQMLLVRCKReqdmhlaGLSHNYGRMKTKEWKWEDMSKRMANAGRTKDADDCMKKWDNLFRNYKKIQRFQ 152 8889999999999944443334445555789**************************************98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence
MRAHSDGGED DVGFGDDADE GMREDVEAGD DDDDVPIRPL GKTAGRGRGR DKGGVRGRSV 60 GRGGRGGVSD DARKSPAYWS AENQMLLVRC KREQDMHLAG LSHNYGRMKT KEWKWEDMSK 120 RMANAGRTKD ADDCMKKWDN LFRNYKKIQR FQNASGRLVF FRLTNEERKE HNFKFRMDRA 180 LYNEIHADMV GNHTIFPPNI ADIGSLDGVH LPRRGAGGGE SVCSEAVGEG CPDERSSAWE 240 SDSNVGSGAG DGKQKNARQQ AFECISDVME RHGALMSSTI ESSSKRQCII FTRQCDILEQ 300 EVVVQKTHYA AFDETQRMMC QALLEIVAAI RGRSAIRALH QYHLWGSPAS MSARLNAPGK 360 KRDVALDETQ AQGKGRRHVP KAKRLRLDDA SASLSRRGAR GWAQAAEEVN DDDFMTEDDQ 420 GEATASAGRE SARQHTLDQS ASKRMSTPPP EAQQLRVRET WKEKGAVVDL DDEDDEPLEK 480 RCLRSATQAT TAAVSTARAA EDERTITGAL PCTLSQPRQR NDGGDGASCE RGGGGGVVAD 540 VRAARREATG GAGVAVAGVV PPVPAAREEA VVPATVREEG RGQNMNQHAS SRGRRGVMTK 600 DLIDRALLWV DDKCFSTTGE GRKLYNIVHE TKEYFVAIAS GLPPPELPRS VVIPKSSMRV 660 ARIADLSQLL QAISRPAAVE NIALRILHGW VFKSGNRPRG YHLAFQYSLE SVATDIARAM 720 WYDEERRKVV SAAICAHTID LNMDLPLWYA DANIEDRPED DDMAAYQEST VISIAHSFRA 780 AVQMGAHIDG DFISY

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence

MRAHSDGGED DVGFGDDADE GMREDVEAGD DDDDVPIRPL GKTAGRGRGR DKGGVRGRSV  60
GRGGRGGVSD DARKSPAYWS AENQMLLVRC KREQDMHLAG LSHNYGRMKT KEWKWEDMSK  120
RMANAGRTKD ADDCMKKWDN LFRNYKKIQR FQNASGRLVF FRLTNEERKE HNFKFRMDRA  180
LYNEIHADMV GNHTIFPPNI ADIGSLDGVH LPRRGAGGGE SVCSEAVGEG CPDERSSAWE  240
SDSNVGSGAG DGKQKNARQQ AFECISDVME RHGALMSSTI ESSSKRQCII FTRQCDILEQ  300
EVVVQKTHYA AFDETQRMMC QALLEIVAAI RGRSAIRALH QYHLWGSPAS MSARLNAPGK  360
KRDVALDETQ AQGKGRRHVP KAKRLRLDDA SASLSRRGAR GWAQAAEEVN DDDFMTEDDQ  420
GEATASAGRE SARQHTLDQS ASKRMSTPPP EAQQLRVRET WKEKGAVVDL DDEDDEPLEK  480
RCLRSATQAT TAAVSTARAA EDERTITGAL PCTLSQPRQR NDGGDGASCE RGGGGGVVAD  540
VRAARREATG GAGVAVAGVV PPVPAAREEA VVPATVREEG RGQNMNQHAS SRGRRGVMTK  600
DLIDRALLWV DDKCFSTTGE GRKLYNIVHE TKEYFVAIAS GLPPPELPRS VVIPKSSMRV  660
ARIADLSQLL QAISRPAAVE NIALRILHGW VFKSGNRPRG YHLAFQYSLE SVATDIARAM  720
WYDEERRKVV SAAICAHTID LNMDLPLWYA DANIEDRPED DDMAAYQEST VISIAHSFRA  780
AVQMGAHIDG DFISY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-07	Trihelix family protein