PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG59368.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 618aa MW: 60814 Da PI: 6.8148

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG59368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.9	3.4e-15	138	217	2	80
trihelix 2 WtkqevlaLiearremeerlrrg......klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 W+ +evlaLiea+r +er ++g k ++ +W+ev +++ + +er ++q + kwenl +yk i+e++++ + c+ GBG59368.1 138 WKVHEVLALIEAKRIEKERQQSGgyreqmKMAEERWAEVEQYLIGHDIERDAEQARRKWENLVSDYKTIREWNRRSA-----PCQ 217 ************7777777643333346899***************************************953.....233 PP

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence
MSAAVSSLPG SPSSAISVPP SPFRMAMGDG SACLVDTSAV GVPTPTPSPP SSAIPSVGVA 60 VAATGGGGNP AATGAAVTTA PAAMLGPSPS HSPTPAPPDF SVAMAPCSSS DHQENGALDS 120 RGDQERSSEN KRKRNPNWKV HEVLALIEAK RIEKERQQSG GYREQMKMAE ERWAEVEQYL 180 IGHDIERDAE QARRKWENLV SDYKTIREWN RRSAPCQVYW DLSPAEKRDH KLPVSMDEVV 240 FHQMDDVHGG GCSGGGGGGG GAVGGGGGGG GGGGGPLCVT GDKTLSLVAI GPGGGPVLAS 300 GLGTLVPSGT TRVSASVVDM AVPVATAVTV AAVPGVSAGG CGSIVAGVRC MENGGNSMTT 360 GCLATGVTVD RMGSSGGGGG VGGGGGGGEV GGGGGNGGGA VMDANAACRA MGASVSSITV 420 QGGGCVPGSP GGSIMDDPIA MAKKKRKKFQ GMIGGGVGEH HYHHPPPGAT HEMAQMMLHI 480 SSNLKDTCRK MDDRRDVTAV VHSDRSGEGL GVCGGIGGGG GGGGAGGGGG GPGGGGAVGG 540 YITGSAVKGH HHHQHHPHGG MGQVLDEAGA TSGTSPGVIG VLAHLASALN KLAEQETSTV 600 ISVLDQLAAA VNKLAEKV

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence

MSAAVSSLPG SPSSAISVPP SPFRMAMGDG SACLVDTSAV GVPTPTPSPP SSAIPSVGVA  60
VAATGGGGNP AATGAAVTTA PAAMLGPSPS HSPTPAPPDF SVAMAPCSSS DHQENGALDS  120
RGDQERSSEN KRKRNPNWKV HEVLALIEAK RIEKERQQSG GYREQMKMAE ERWAEVEQYL  180
IGHDIERDAE QARRKWENLV SDYKTIREWN RRSAPCQVYW DLSPAEKRDH KLPVSMDEVV  240
FHQMDDVHGG GCSGGGGGGG GAVGGGGGGG GGGGGPLCVT GDKTLSLVAI GPGGGPVLAS  300
GLGTLVPSGT TRVSASVVDM AVPVATAVTV AAVPGVSAGG CGSIVAGVRC MENGGNSMTT  360
GCLATGVTVD RMGSSGGGGG VGGGGGGGEV GGGGGNGGGA VMDANAACRA MGASVSSITV  420
QGGGCVPGSP GGSIMDDPIA MAKKKRKKFQ GMIGGGVGEH HYHHPPPGAT HEMAQMMLHI  480
SSNLKDTCRK MDDRRDVTAV VHSDRSGEGL GVCGGIGGGG GGGGAGGGGG GPGGGGAVGG  540
YITGSAVKGH HHHQHHPHGG MGQVLDEAGA TSGTSPGVIG VLAHLASALN KLAEQETSTV  600
ISVLDQLAAA VNKLAEKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	444	448	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-14	Trihelix family protein