PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG59489.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 552aa MW: 60198.2 Da PI: 8.3314

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG59489.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.5	4.5e-10	332	408	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekk 70 Wt ++ aLi+a+r+ +++l r k k +W+ v k++ + g+ +r+++ C +kw+nl +++k + + +++ GBG59489.1 332 WTVEHMIALIRAKRDQDSHLPglahttgRMKTKTWKWDGVEKRLVHMGVtSRKAVDCGKKWDNLYQQFKTVHKFMGE 408 ************8888777555443356899999****99999799***************99876665 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MADLYRRLPL LLLAVLLLLA VLLLLAVVVF HICCLVRVPR RKQTRRKSKT ARKMERVQTR 60 TTLSVGAAGS SRQRCRSAEA VSRPYDPVLY SHLPSHEIPL PPSDDDGDDP RCSTLPLGSG 120 STQDWMGSQL HRRASMTTYT DLLEGRAPAG YDAGLVDLSF GLRSGSAEEA TRTVIVNPAS 180 GTTHAPPPVT TRTGQSVPCR TTTAGGIVDG RRPNEEWSAT EVVGQKFWDD HRRQSREASM 240 AGITRGVAKI SVGADDILRD EDGGVAEDCE ADDGAGNDDE EDDEDMEIRP LGRKRGGSTA 300 AKKLPETRTG WRGKKGVEDA SAGEGSKSRD FWTVEHMIAL IRAKRDQDSH LPGLAHTTGR 360 MKTKTWKWDG VEKRLVHMGV TSRKAVDCGK KWDNLYQQFK TVHKFMGESG KPNFFTLTPG 420 ERKERGFNFR MDERVYSEMA AMTRSDHTIH PTNLADTGAT GGVQMPGPRG GRNESGGSEG 480 GGDGQDDDQG STKDSISGXG VGGGSKRKNV RQQTFDTIAD VMKEHASLMA STVDSASKRQ 540 CSILTRQCDI LE

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MADLYRRLPL LLLAVLLLLA VLLLLAVVVF HICCLVRVPR RKQTRRKSKT ARKMERVQTR  60
TTLSVGAAGS SRQRCRSAEA VSRPYDPVLY SHLPSHEIPL PPSDDDGDDP RCSTLPLGSG  120
STQDWMGSQL HRRASMTTYT DLLEGRAPAG YDAGLVDLSF GLRSGSAEEA TRTVIVNPAS  180
GTTHAPPPVT TRTGQSVPCR TTTAGGIVDG RRPNEEWSAT EVVGQKFWDD HRRQSREASM  240
AGITRGVAKI SVGADDILRD EDGGVAEDCE ADDGAGNDDE EDDEDMEIRP LGRKRGGSTA  300
AKKLPETRTG WRGKKGVEDA SAGEGSKSRD FWTVEHMIAL IRAKRDQDSH LPGLAHTTGR  360
MKTKTWKWDG VEKRLVHMGV TSRKAVDCGK KWDNLYQQFK TVHKFMGESG KPNFFTLTPG  420
ERKERGFNFR MDERVYSEMA AMTRSDHTIH PTNLADTGAT GGVQMPGPRG GRNESGGSEG  480
GGDGQDDDQG STKDSISGXG VGGGSKRKNV RQQTFDTIAD VMKEHASLMA STVDSASKRQ  540
CSILTRQCDI LE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-07	Trihelix family protein