PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG59572.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 2395aa MW: 264546 Da PI: 6.4963

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG59572.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.9	5.4e-13	362	433	2	66
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+ +++ aLi+a+r m++++ r k ++ +W++v+++++ g+ r++ +C +kw+nl +++kk+ + GBG59572.1 362 WSVEHIIALIRAKRdqdvhmeGMGHAYARMKPREWKWQDVAQRLKNMGVDREADKCGKKWDNLMQQFKKVHH 433 9***********66665555666666889************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 2395 aa Download sequence
MSIPDANGGY DSGSSTTAKG EQQSPTNRVV YLKQGLMLHN ACASDRRTVL ENKSNGMKTS 60 ERSKFATNGK MACWVHQCPT IMRLDCFHSV RPTQFPFVAD RAHGHKWAAT ELGETGGGLC 120 EQSFTDLLRS GLSGDEGDGS VNLSFGLSTG RSSTPSRTLL VNPHPDNDGG QLTVVDRPSK 180 TRALAWEATG ANPNPSMQAA RAPSLSRGAS GRPQWVQLPS PLSAASSVAR RRDDGVDTET 240 AFFDVGDDRD GREVWAEQRR DVRAGREESI RWGVEWLPVA DQEKDTDTTH AEGDDNNDND 300 NDGEGGKGES GYVSPFRHKD MAGRGGKTKA SCRNARPWGK KAQGKGSNGD GDGGAEEKRN 360 FWSVEHIIAL IRAKRDQDVH MEGMGHAYAR MKPREWKWQD VAQRLKNMGV DREADKCGKK 420 WDNLMQQFKK VHHFQTPSGG QDFFQLNGKK RANRGFNFNM DRAVYDEIEG STGKNHTIYP 480 KNVADTGASS GVRMPTAASP DPESVVDGDD GVGRDDDEEG SMRGSSQTTG SPDGFGKRTS 540 TRQPTFEAMT ECMEKHGALM ASRMESASSN APSRMGCVLT LLSPSPRVPF SSSTLLVVLS 600 PSRHIVAFSP STLLAILSPS RCVPFSPSTL LAVLLPSRHT LAFSSSTLLA ILSASRRVPL 660 SSSTLVPVLS PSRRLPFSSS SCLQDEWVGK EPRNNEDDDF EEEEESLKRK PRGKTAGVVK 720 INEGGKETPG QQHGGGGSAG AEADVILVKR DVACREIAGC PKDGAVAQDT AQRPQTPVNR 780 RNPPPANVVG SSQVPSQGNA VRSSAYEARG GGVEAAQDAG EGVRAGDGGP IGEDDEALVH 840 RLRAPRESSH AMQGAAKLWE DDMCFWNETQ GNAIVKIIKE ARTHLVGVAR GVQPPAVWSS 900 IALPHNTIPQ HKIEDESELN AAKERAVKVQ TIALRVIHGW IFKSESRQRG RGGCLSAGGR 960 GTTAYGARKE PRRRLKASRS MAWKKLILVG PMEVNVWTTG SNGLTEMCGV IPEINDAKKK 1020 LTFDRANITE FLIDYENLAT LLKWTEEEKM EHLGQHVSLS LGRDIMAIVA SSGSWKESRN 1080 EMMRKYLKAE KMATEAELAA VKRKNYATYN DFLMTFTLKA LRIPRVTDRI MSKYFLRQFS 1140 EFDNDKIMSA YQQTSKFEHK RDMDFNTVTD LAEKTVVTET LALLKEGEVI DLTGKTGDKV 1200 KKGIESLHEW VHGVDSKMDR MENALLVMQA QVSRPALPPQ EAVVPAAVAN RGFGRRDPAN 1260 EQCKYCTMIG HFVRACPRLN HDIERQRSSR SLKGEILGPR GERVNWNSPG GMRRAVILLN 1320 NLEIVAVEAE PIADIVWDQP RGRGPQANFI LEGNDQDRVN ITTRRAGAEN KLIQDTVMEE 1380 LVGTSTGQQE TEAAEQEKVY GKPREDEPVD KTTTAKKKFR YQISILTSPE IDGTLSKLLG 1440 TMVSVSFQTM LQASPRLLKG LRQLLTRKHV EVEEAPELQE QDTEEAEAPQ GVPNLKSIPG 1500 GLGELEKAFA DIRLSLPDHE GGEVMRAPLG TKLSFHALPV GKLKVQIGTH HTNALVDGGA 1560 EITLIRWDFA TVTGCTVNKE VVGSIRGAGG KIRFTGYVTK CAVRAGIRES IWSFQRMTVM 1620 EEMDYDVILG RPWCANVEMI GMHLHDDTYM VDIKDPVTGR GELLRLLGTG GDPPKGKLAT 1680 WFPTFEARKG AFARMEGMRE RVEIMIEEAF SKKEWIKMGL PIKKRRPEDE SLGVMVAEKE 1740 QEVELGASLP KPKEGRNETP ELALEIPDLL HKVGVDPTTL AKFEDEVRKG YCLNGKIVSI 1800 QPQGSVRKYK PVGKKTKLVS ILVETSKEEA MEKEEEILKV IRERRATEGD RIPNEVADTM 1860 KIGVEGFLTA EETQLIRKAC QEFHLAFAFN DHQKRRLDAK LVPPVRIHTV QHECWNDKGP 1920 AYEFGIAAEV TDLLRVKIDS FVAKPTASPY ANKWFVFRKP NKTLRWIQNL QKLNAVTIRD 1980 AGSLPQIDLL AESHAGRSIY SLVDLYSGYD QLPLDVRDRP YTAMHTPVGQ LQMQVTSMGF 2040 TNAVAEAQRR MLAVAGDIFS KKCEPYIDDN PVKGARYKDE TEVEPGVKRI AGLRNRADGL 2100 SRVCITLEGV EDAEPIDAFL EYEGGTLVVD NEMADPAITT GQLPIQTLGK GTPAVVAELR 2160 EGPVTTVRRK EGKDSWGAEV GAREELMPMT VEGGRDAVMM LAETWAQKEC QYLVNLTREE 2220 QGTDKNEQEF VLIQMLDDDP HLSTEELITA RRQQVARNEE ALEEVVNRVT DNRMRDKARW 2280 DQAGRGTIVK ASWRVKLQEK KLYVGFDHNL VVNRGGRKQG TRGPSPLKEG EPIELPSDGD 2340 HSSKEEGNPE EGQRPGESEP VEFIDLTNDE EEDEVTTPTR EDRGREEDPG EEKDP

Sequence ? help Back to Top

Protein Sequence Length: 2395 aa Download sequence

MSIPDANGGY DSGSSTTAKG EQQSPTNRVV YLKQGLMLHN ACASDRRTVL ENKSNGMKTS  60
ERSKFATNGK MACWVHQCPT IMRLDCFHSV RPTQFPFVAD RAHGHKWAAT ELGETGGGLC  120
EQSFTDLLRS GLSGDEGDGS VNLSFGLSTG RSSTPSRTLL VNPHPDNDGG QLTVVDRPSK  180
TRALAWEATG ANPNPSMQAA RAPSLSRGAS GRPQWVQLPS PLSAASSVAR RRDDGVDTET  240
AFFDVGDDRD GREVWAEQRR DVRAGREESI RWGVEWLPVA DQEKDTDTTH AEGDDNNDND  300
NDGEGGKGES GYVSPFRHKD MAGRGGKTKA SCRNARPWGK KAQGKGSNGD GDGGAEEKRN  360
FWSVEHIIAL IRAKRDQDVH MEGMGHAYAR MKPREWKWQD VAQRLKNMGV DREADKCGKK  420
WDNLMQQFKK VHHFQTPSGG QDFFQLNGKK RANRGFNFNM DRAVYDEIEG STGKNHTIYP  480
KNVADTGASS GVRMPTAASP DPESVVDGDD GVGRDDDEEG SMRGSSQTTG SPDGFGKRTS  540
TRQPTFEAMT ECMEKHGALM ASRMESASSN APSRMGCVLT LLSPSPRVPF SSSTLLVVLS  600
PSRHIVAFSP STLLAILSPS RCVPFSPSTL LAVLLPSRHT LAFSSSTLLA ILSASRRVPL  660
SSSTLVPVLS PSRRLPFSSS SCLQDEWVGK EPRNNEDDDF EEEEESLKRK PRGKTAGVVK  720
INEGGKETPG QQHGGGGSAG AEADVILVKR DVACREIAGC PKDGAVAQDT AQRPQTPVNR  780
RNPPPANVVG SSQVPSQGNA VRSSAYEARG GGVEAAQDAG EGVRAGDGGP IGEDDEALVH  840
RLRAPRESSH AMQGAAKLWE DDMCFWNETQ GNAIVKIIKE ARTHLVGVAR GVQPPAVWSS  900
IALPHNTIPQ HKIEDESELN AAKERAVKVQ TIALRVIHGW IFKSESRQRG RGGCLSAGGR  960
GTTAYGARKE PRRRLKASRS MAWKKLILVG PMEVNVWTTG SNGLTEMCGV IPEINDAKKK  1020
LTFDRANITE FLIDYENLAT LLKWTEEEKM EHLGQHVSLS LGRDIMAIVA SSGSWKESRN  1080
EMMRKYLKAE KMATEAELAA VKRKNYATYN DFLMTFTLKA LRIPRVTDRI MSKYFLRQFS  1140
EFDNDKIMSA YQQTSKFEHK RDMDFNTVTD LAEKTVVTET LALLKEGEVI DLTGKTGDKV  1200
KKGIESLHEW VHGVDSKMDR MENALLVMQA QVSRPALPPQ EAVVPAAVAN RGFGRRDPAN  1260
EQCKYCTMIG HFVRACPRLN HDIERQRSSR SLKGEILGPR GERVNWNSPG GMRRAVILLN  1320
NLEIVAVEAE PIADIVWDQP RGRGPQANFI LEGNDQDRVN ITTRRAGAEN KLIQDTVMEE  1380
LVGTSTGQQE TEAAEQEKVY GKPREDEPVD KTTTAKKKFR YQISILTSPE IDGTLSKLLG  1440
TMVSVSFQTM LQASPRLLKG LRQLLTRKHV EVEEAPELQE QDTEEAEAPQ GVPNLKSIPG  1500
GLGELEKAFA DIRLSLPDHE GGEVMRAPLG TKLSFHALPV GKLKVQIGTH HTNALVDGGA  1560
EITLIRWDFA TVTGCTVNKE VVGSIRGAGG KIRFTGYVTK CAVRAGIRES IWSFQRMTVM  1620
EEMDYDVILG RPWCANVEMI GMHLHDDTYM VDIKDPVTGR GELLRLLGTG GDPPKGKLAT  1680
WFPTFEARKG AFARMEGMRE RVEIMIEEAF SKKEWIKMGL PIKKRRPEDE SLGVMVAEKE  1740
QEVELGASLP KPKEGRNETP ELALEIPDLL HKVGVDPTTL AKFEDEVRKG YCLNGKIVSI  1800
QPQGSVRKYK PVGKKTKLVS ILVETSKEEA MEKEEEILKV IRERRATEGD RIPNEVADTM  1860
KIGVEGFLTA EETQLIRKAC QEFHLAFAFN DHQKRRLDAK LVPPVRIHTV QHECWNDKGP  1920
AYEFGIAAEV TDLLRVKIDS FVAKPTASPY ANKWFVFRKP NKTLRWIQNL QKLNAVTIRD  1980
AGSLPQIDLL AESHAGRSIY SLVDLYSGYD QLPLDVRDRP YTAMHTPVGQ LQMQVTSMGF  2040
TNAVAEAQRR MLAVAGDIFS KKCEPYIDDN PVKGARYKDE TEVEPGVKRI AGLRNRADGL  2100
SRVCITLEGV EDAEPIDAFL EYEGGTLVVD NEMADPAITT GQLPIQTLGK GTPAVVAELR  2160
EGPVTTVRRK EGKDSWGAEV GAREELMPMT VEGGRDAVMM LAETWAQKEC QYLVNLTREE  2220
QGTDKNEQEF VLIQMLDDDP HLSTEELITA RRQQVARNEE ALEEVVNRVT DNRMRDKARW  2280
DQAGRGTIVK ASWRVKLQEK KLYVGFDHNL VVNRGGRKQG TRGPSPLKEG EPIELPSDGD  2340
HSSKEEGNPE EGQRPGESEP VEFIDLTNDE EEDEVTTPTR EDRGREEDPG EEKDP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1723	1753	KKRRPEDESLGVMVAEKEQEVELGASLPKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	9e-08	Trihelix family protein