PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG59896.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C2H2

Protein Properties

Length: 809aa MW: 90677.6 Da PI: 7.1928

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG59896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.5e-06	661	682	4	23
T..TTTEEESSHHHHHHHHHHT CS zf-C2H2 4 p..dCgksFsrksnLkrHirtH 23 Cg++F ++ nL+ H++ H GBG59896.1 661 LepGCGRRFATPGNLRDHMNEH 682 5559****************99 PP
2	zf-C2H2	18.1	7.5e-06	688	712	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ykC+ Cg +F++k +L rH+++H GBG59896.1 688 YKCTtdGCGARFPSKQLLCRHMKKH 712 99**********************9 PP
3	zf-C2H2	15.2	6.1e-05	716	740	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F k+ L++H++ H GBG59896.1 716 HVCTfeGCGKRFAFKERLVVHQKIH 740 789999*****************99 PP
4	zf-C2H2	20.4	1.3e-06	747	770	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk+F+ + +L+ H+rtH GBG59896.1 747 TCPweGCGKTFKWPNSLHGHMRTH 770 79999******************9 PP
5	zf-C2H2	11.6	0.00087	776	800	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kC Cg+ F k +L+rH rtH GBG59896.1 776 FKCMypGCGRLFGYKVDLTRHNRTH 800 789999******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence
MRLVSERHDG SLERFVNANV TSTAQMTEKS SKRVMPKRPA LTKWKRINIG CPAFGGSLAT 60 ECASLSRQSR GIGRSYTMKE FHSRWCHFTT WDLLTSSRTS RPSSVSCVPG VSQCRWHGTE 120 GSADIARDSR AVEGDAVVGM QGDDPFAGAA DVATNVTTVQ GDVVVGERGD DPVAETGKAT 180 MAGDADEDAA DEEAADAAPS SSDVLCNPDA GLRLVSVRPG REIWGCFGVG IPRDNKGCCW 240 DDDGWSWGPG EGGAGEVLGI LSDVAVLARA WDDDEIRVVC EKLELRKRKY TRQCKELGGR 300 SAKVEQIFLK IWELDDSHLE GWVLETWMGN SPAMLNNSTA RCNNLGVEDE ERDAITNTIQ 360 DFPPTSSRKG GDAAECDQFT ALAPLAFAYW VEHTSTGFRH AIWKMDTFNH LAPLSIRELQ 420 FLGSVTDTQE GKELRPVEYM SRKMPSKKSA KSTNERELYA LYKALVHWRH YLLGRFFYLR 480 SDHQTLKWIK TQPVLFDALK CWIEVMDQYD FKLDYVKGEY NKVADALSRR TRCLGALISE 540 SSLSKNVTRS LGEAYKEDPI TMDIINKLKG KDEATTDEFV MVDGLLFLEK AGFKRFDQLK 600 GNDAQELAMA FNSLAEKTPG VELTRSLLET SWEDLTIPQL EKMLEETKKL LSVNEKVHDC 660 LEPGCGRRFA TPGNLRDHMN EHSGEKPYKC TTDGCGARFP SKQLLCRHMK KHERAHVCTF 720 EGCGKRFAFK ERLVVHQKIH SDERPLTCPW EGCGKTFKWP NSLHGHMRTH TGEKPFKCMY 780 PGCGRLFGYK VDLTRHNRTH NGQPARLSH

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence

MRLVSERHDG SLERFVNANV TSTAQMTEKS SKRVMPKRPA LTKWKRINIG CPAFGGSLAT  60
ECASLSRQSR GIGRSYTMKE FHSRWCHFTT WDLLTSSRTS RPSSVSCVPG VSQCRWHGTE  120
GSADIARDSR AVEGDAVVGM QGDDPFAGAA DVATNVTTVQ GDVVVGERGD DPVAETGKAT  180
MAGDADEDAA DEEAADAAPS SSDVLCNPDA GLRLVSVRPG REIWGCFGVG IPRDNKGCCW  240
DDDGWSWGPG EGGAGEVLGI LSDVAVLARA WDDDEIRVVC EKLELRKRKY TRQCKELGGR  300
SAKVEQIFLK IWELDDSHLE GWVLETWMGN SPAMLNNSTA RCNNLGVEDE ERDAITNTIQ  360
DFPPTSSRKG GDAAECDQFT ALAPLAFAYW VEHTSTGFRH AIWKMDTFNH LAPLSIRELQ  420
FLGSVTDTQE GKELRPVEYM SRKMPSKKSA KSTNERELYA LYKALVHWRH YLLGRFFYLR  480
SDHQTLKWIK TQPVLFDALK CWIEVMDQYD FKLDYVKGEY NKVADALSRR TRCLGALISE  540
SSLSKNVTRS LGEAYKEDPI TMDIINKLKG KDEATTDEFV MVDGLLFLEK AGFKRFDQLK  600
GNDAQELAMA FNSLAEKTPG VELTRSLLET SWEDLTIPQL EKMLEETKKL LSVNEKVHDC  660
LEPGCGRRFA TPGNLRDHMN EHSGEKPYKC TTDGCGARFP SKQLLCRHMK KHERAHVCTF  720
EGCGKRFAFK ERLVVHQKIH SDERPLTCPW EGCGKTFKWP NSLHGHMRTH TGEKPFKCMY  780
PGCGRLFGYK VDLTRHNRTH NGQPARLSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	2e-27	C2H2 family protein