PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG60398.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 688aa MW: 72148 Da PI: 7.8648

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG60398.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.6e-08	25	49	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+ Cr+f++tGtC yG +Ck +H+ GBG60398.1 25 KQQDCRHFLQTGTCAYGRSCKHSHP 49 8899*****************9998 PP
2	zf-CCCH	37.4	4.1e-12	89	115	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++a+tGtCk+G +CkF+H+p GBG60398.1 89 PGQPECPHYAKTGTCKFGISCKFHHSP 115 5789*********************96 PP
3	zf-CCCH	39.4	1e-12	155	180	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++++tG+Ck+G +CkF+H++ GBG60398.1 155 GQKDCDYYMKTGQCKFGVSCKFNHPE 180 7889********************96 PP
4	zf-CCCH	29	1.9e-09	475	498	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +Cr++ rtG CkyG +C+++H++ GBG60398.1 475 LECRYYVRTGACKYGMSCRYHHPK 498 58********************96 PP
5	zf-CCCH	30.8	4.9e-10	533	558	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C f+ r+G Ck+G +CkF H+ GBG60398.1 533 PGQPPCTFYVRNGDCKFGQTCKFDHP 558 5799*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence
MEAGGALVGP SPRERIGDQC QQQQKQQDCR HFLQTGTCAY GRSCKHSHPI TGRAVFASLG 60 SFTSAERRRG EEQQQHQVRQ QPAQHPERPG QPECPHYAKT GTCKFGISCK FHHSPHLVRL 120 SPVAASTTFL LAAQSQAQRV GGVVLNGSRY PLRPGQKDCD YYMKTGQCKF GVSCKFNHPE 180 LIAASSRAPV YPPPSKPAVP IPVPTPTVSA GYQTAPGALG RSGPPAIPVS PVVFPVPVRP 240 VGLARFPPFS TQPGQAVPSG PGHVHCLVQH PGGIVYLPPG WNYQYVWPAP ADPTHLLSRP 300 QSHQVNSAPQ SQQQQQHAQP MSAGSAAGDG GSFFLPPRSH LPPPPRPPLS PPPAATSATV 360 SGPGGDSLAS GGLGVVRGGG TVIPVAGPVA PFAPSSNPGL LTANPNVNFM SKSTEMPPSL 420 PALPKAPYPP GMIGVQGIMP SSHNGPGGCT GVVLFPQLLP RNSAAAPFPE RPGQLECRYY 480 VRTGACKYGM SCRYHHPKDR KAAAMASGSG SSGAGPGTAA RCALNPMGFP LRPGQPPCTF 540 YVRNGDCKFG QTCKFDHPVG ELEYCPSASS LVDMPVAPLP ERSLAVAAEE ENGVVEATLH 600 KPKQEVKGQS TGGSSEVNRP DDEENGGDND DEDDDDEEDV EEHDLKGGRH QGGNGADSAL 660 KVTAEEVNSA PIQAVVIENS GLVSVGSH

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence

MEAGGALVGP SPRERIGDQC QQQQKQQDCR HFLQTGTCAY GRSCKHSHPI TGRAVFASLG  60
SFTSAERRRG EEQQQHQVRQ QPAQHPERPG QPECPHYAKT GTCKFGISCK FHHSPHLVRL  120
SPVAASTTFL LAAQSQAQRV GGVVLNGSRY PLRPGQKDCD YYMKTGQCKF GVSCKFNHPE  180
LIAASSRAPV YPPPSKPAVP IPVPTPTVSA GYQTAPGALG RSGPPAIPVS PVVFPVPVRP  240
VGLARFPPFS TQPGQAVPSG PGHVHCLVQH PGGIVYLPPG WNYQYVWPAP ADPTHLLSRP  300
QSHQVNSAPQ SQQQQQHAQP MSAGSAAGDG GSFFLPPRSH LPPPPRPPLS PPPAATSATV  360
SGPGGDSLAS GGLGVVRGGG TVIPVAGPVA PFAPSSNPGL LTANPNVNFM SKSTEMPPSL  420
PALPKAPYPP GMIGVQGIMP SSHNGPGGCT GVVLFPQLLP RNSAAAPFPE RPGQLECRYY  480
VRTGACKYGM SCRYHHPKDR KAAAMASGSG SSGAGPGTAA RCALNPMGFP LRPGQPPCTF  540
YVRNGDCKFG QTCKFDHPVG ELEYCPSASS LVDMPVAPLP ERSLAVAAEE ENGVVEATLH  600
KPKQEVKGQS TGGSSEVNRP DDEENGGDND DEDDDDEEDV EEHDLKGGRH QGGNGADSAL  660
KVTAEEVNSA PIQAVVIENS GLVSVGSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	6e-36	C3H family protein