PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG60471.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 993aa MW: 108350 Da PI: 6.8403

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG60471.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33.1	1.4e-10	289	365	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekk 70 Wt ++ aLi+a+r+ +++l r k k +W++v k++ + g+ +r+++ C +kw+nl +++k + + +++ GBG60471.1 289 WTVEHMIALIRAKRDQDSHLAglahttgRMKTKTWKWDDVEKRLVQMGVtSRKAVNCGKKWDNLYQQFKTVHKFMGE 365 ************888888855554335689999*****99999899***************99876665 PP

Sequence ? help Back to Top
Protein Sequence Length: 993 aa Download sequence
MRRTSKTARK MERVQTRTTL SVGAAGSSRQ RCRSAEAVRR PYDLALYSHL PSHEIPLPPS 60 DDDGDDPRCS TLPLGSGSTQ DWMGSQLHRQ ASTPTYTDLL EGHTPAGYDA GLVIISFGLR 120 SGSAEEVTRT VIVNPGSGRT RTPAPVTTRT GGSVPCRTAT AGGTRDGRRP NEEWLATEVV 180 GRKFWDDHRR QSREASTAGI TRGVAKITVG ADDILGDEDG AVAEDCEADD GAGGDDEEDD 240 EEMEIRPVGR KRGGSRAAKK FPETQTRRRG KKGVEDGSAG EGSKSRDFWT VEHMIALIRA 300 KRDQDSHLAG LAHTTGRMKT KTWKWDDVEK RLVQMGVTSR KAVNCGKKWD NLYQQFKTVH 360 KFMGESGKPN FFTLTPGERK ERGFDFQMDE GVYSEMAVMT RSDHTIHPTN LADTGPRGER 420 GWTGRRSRVH EGFYQRQWCC RGQQTEECET TDLRHDCRRD EGARESDGDN RGRREQETMP 480 PRGASARGRK DGGGGDGGET NKGRGHIPKS KRQRINDASS SQTDDFLADE VAMVDAQGTE 540 GVARLGFGRD GVAREQLQAL KRSVVGGAVG MVPRTPNTAG VVVTGARVPG QLSSAAGQGQ 600 PRQPLPLQHV LASGGGHMVT AQKGDATASA SQAAAADHTA KGGVVEDGKR EGNDGDDRPL 660 LPRGKGAPKG DDLEEKAKLW VDCDAFWGQG PGKPLREAVG ECTDYFVAIA NGDAGVEPPS 720 MLIMPPNDVP RFKIDDPAQR DPALXRARSV ERVVLXTIHG WIFKSQSRST GFSRAESYIT 780 VDFATDLARA VWQALEWSRV VSPAPVYHTL AMKMDVPLWF AGVKIEDRPE DDDMATRQEA 840 TVLLLAECWT DAIWCGQWAD GGRVKQERLS RLADSLRALL CAVMWIMRMG GDNDRSDYEA 900 WSYASMIAKP MMIAAGSYIF NWRRHVVDSA NLVLDCLGKA HLTMGDYPQC ILEWCDCGLA 960 FGHNAALKNA AEAAKHGWIG SGPPTDDDGD DGK

Sequence ? help Back to Top

Protein Sequence Length: 993 aa Download sequence

MRRTSKTARK MERVQTRTTL SVGAAGSSRQ RCRSAEAVRR PYDLALYSHL PSHEIPLPPS  60
DDDGDDPRCS TLPLGSGSTQ DWMGSQLHRQ ASTPTYTDLL EGHTPAGYDA GLVIISFGLR  120
SGSAEEVTRT VIVNPGSGRT RTPAPVTTRT GGSVPCRTAT AGGTRDGRRP NEEWLATEVV  180
GRKFWDDHRR QSREASTAGI TRGVAKITVG ADDILGDEDG AVAEDCEADD GAGGDDEEDD  240
EEMEIRPVGR KRGGSRAAKK FPETQTRRRG KKGVEDGSAG EGSKSRDFWT VEHMIALIRA  300
KRDQDSHLAG LAHTTGRMKT KTWKWDDVEK RLVQMGVTSR KAVNCGKKWD NLYQQFKTVH  360
KFMGESGKPN FFTLTPGERK ERGFDFQMDE GVYSEMAVMT RSDHTIHPTN LADTGPRGER  420
GWTGRRSRVH EGFYQRQWCC RGQQTEECET TDLRHDCRRD EGARESDGDN RGRREQETMP  480
PRGASARGRK DGGGGDGGET NKGRGHIPKS KRQRINDASS SQTDDFLADE VAMVDAQGTE  540
GVARLGFGRD GVAREQLQAL KRSVVGGAVG MVPRTPNTAG VVVTGARVPG QLSSAAGQGQ  600
PRQPLPLQHV LASGGGHMVT AQKGDATASA SQAAAADHTA KGGVVEDGKR EGNDGDDRPL  660
LPRGKGAPKG DDLEEKAKLW VDCDAFWGQG PGKPLREAVG ECTDYFVAIA NGDAGVEPPS  720
MLIMPPNDVP RFKIDDPAQR DPALXRARSV ERVVLXTIHG WIFKSQSRST GFSRAESYIT  780
VDFATDLARA VWQALEWSRV VSPAPVYHTL AMKMDVPLWF AGVKIEDRPE DDDMATRQEA  840
TVLLLAECWT DAIWCGQWAD GGRVKQERLS RLADSLRALL CAVMWIMRMG GDNDRSDYEA  900
WSYASMIAKP MMIAAGSYIF NWRRHVVDSA NLVLDCLGKA HLTMGDYPQC ILEWCDCGLA  960
FGHNAALKNA AEAAKHGWIG SGPPTDDDGD DGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	509	514	KSKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-06	Trihelix family protein