PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG62082.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 669aa MW: 69675.5 Da PI: 7.9356

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG62082.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.6	6.6e-11	117	142	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + C+f++rtGtC +G +CkF+H+p GBG62082.1 117 GVQDCPFYLRTGTCGFGQQCKFNHPP 142 6679********************96 PP
2	zf-CCCH	38.1	2.5e-12	166	191	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+++++tGtCk+G++Ck++H+ GBG62082.1 166 PGQPECQYYMKTGTCKFGATCKYHHP 191 5789*********************8 PP
3	zf-CCCH	29.7	1.1e-09	219	244	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++r+ C++G +C+F+H++ GBG62082.1 219 GEKECAYYMRNRVCRFGVTCRFHHPQ 244 7899********************97 PP
4	zf-CCCH	33.1	9.4e-11	448	474	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++rtG CkyG +C+++H++ GBG62082.1 448 PGQPECTFYMRTGDCKYGMSCRYHHPK 474 5789*********************96 PP
5	zf-CCCH	25.9	1.7e-08	495	519	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f+ r+G Ck+G +CkF H+ GBG62082.1 495 GQPQCSFYTRYGVCKFGHTCKFDHP 519 7899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence
MEYYLSSLGQ SSQPALAARS CHGTGYLVGS EGQTGSLLPT RSEWGSRQAI ATAAAASNNS 60 QRTSALGFEE GGWNSEPVLQ QEPGGMEGGR VVAPPPPPPP PPHPPFPSLA IYPERPGVQD 120 CPFYLRTGTC GFGQQCKFNH PPNGRASAAG YQSFSTKGKL EYPERPGQPE CQYYMKTGTC 180 KFGATCKYHH PCLKLGSNPN AYQPPRPPLN SLGYPLRPGE KECAYYMRNR VCRFGVTCRF 240 HHPQLPPTNG AGLMQPRAGP LPHPLVNPSP PHLPFQMGSL QPWQVRSLTT ARFPVFPHQQ 300 VQYLPPHGCA HGSSGVAAAP SSSPPHVFSQ HPPHQQGPRP PQHANANPSQ QHSVPGPPYY 360 YTTPGGPGSA AGPLSEQNAA GGSGGGMATA VPPYFAGHGT HFMPSVPCGP MGMAAQAGGP 420 TAAAGQGGTA GVGGMVYLQQ TREFPERPGQ PECTFYMRTG DCKYGMSCRY HHPKDRGVPA 480 AQCALSSMGL PLRPGQPQCS FYTRYGVCKF GHTCKFDHPV GLDYSPSASS LVDLPVAPVS 540 YTGGTSPLAN QSGDGRNEAG EMHSSTSQER QQQLLIGEGD EEREKQDEDG SSQVEDMGGK 600 KTTGGGSATA DGGEAGGPPV AAQANAAAVA GVVSGLGGNG GTHQSAGGGM YCSSMTAQTG 660 GNGSGSSTG

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence

MEYYLSSLGQ SSQPALAARS CHGTGYLVGS EGQTGSLLPT RSEWGSRQAI ATAAAASNNS  60
QRTSALGFEE GGWNSEPVLQ QEPGGMEGGR VVAPPPPPPP PPHPPFPSLA IYPERPGVQD  120
CPFYLRTGTC GFGQQCKFNH PPNGRASAAG YQSFSTKGKL EYPERPGQPE CQYYMKTGTC  180
KFGATCKYHH PCLKLGSNPN AYQPPRPPLN SLGYPLRPGE KECAYYMRNR VCRFGVTCRF  240
HHPQLPPTNG AGLMQPRAGP LPHPLVNPSP PHLPFQMGSL QPWQVRSLTT ARFPVFPHQQ  300
VQYLPPHGCA HGSSGVAAAP SSSPPHVFSQ HPPHQQGPRP PQHANANPSQ QHSVPGPPYY  360
YTTPGGPGSA AGPLSEQNAA GGSGGGMATA VPPYFAGHGT HFMPSVPCGP MGMAAQAGGP  420
TAAAGQGGTA GVGGMVYLQQ TREFPERPGQ PECTFYMRTG DCKYGMSCRY HHPKDRGVPA  480
AQCALSSMGL PLRPGQPQCS FYTRYGVCKF GHTCKFDHPV GLDYSPSASS LVDLPVAPVS  540
YTGGTSPLAN QSGDGRNEAG EMHSSTSQER QQQLLIGEGD EEREKQDEDG SSQVEDMGGK  600
KTTGGGSATA DGGEAGGPPV AAQANAAAVA GVVSGLGGNG GTHQSAGGGM YCSSMTAQTG  660
GNGSGSSTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	598	606	GGKKTTGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-41	C3H family protein