PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG62291.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 846aa MW: 89365.8 Da PI: 6.6394

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG62291.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.5	2.4e-20	2	71	18	86
trihelix 18 eerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 e ++++++ +k++lWeev++km++ g++rs+k+Ckekwen+ k+y+k+ke++k++ + ++++y+ +le GBG62291.1 2 EPAFQSANslQKGHLWEEVGRKMSDLGYQRSAKKCKEKWENVTKYYRKTKESSKSG-GADARNYRYYAELE 71 56666543349******************************************9.67778*****98 PP
2	trihelix	88.1	1e-27	366	449	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+kq+v+aLi++r++me ++++ k++lWe +s++m++ gf+rs+k+Ckekwen+nk++++ k + ++++++cpyf l+ GBG62291.1 366 RWPKQQVQALIQFRSSMEGSFQEPGPKQHLWEVISARMARLGFSRSAKRCKEKWENINKYFRRSKSKGRV--DGKKKKCPYFALLD 449 8*************************************************************988876..688899**9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 846 aa Download sequence
MEPAFQSANS LQKGHLWEEV GRKMSDLGYQ RSAKKCKEKW ENVTKYYRKT KESSKSGGAD 60 ARNYRYYAEL ERFYREGGES ALAAAAAARS SQGGDGNGGA SEESEEEEHE GLGGQEVEEE 120 EDELVESGGK RKRKRRGDVE EALLSMERMM KRILYCHHQQ QQRMFETIDK REKDRLAKEE 180 EWRRQEQARL AHEQKLRESE HVSAANRESA LVIILQKLAA GMAPGCPQPL SLPLLAASLS 240 SPTKPSVNAC ALPTPALGAE AFPPQQAHGV AGMTMAMGGG TPATVFAPAG TAIARGSAAT 300 PASTLLAGGG AKGSGPVATV GSEGGADAGA ESPATAAIPV AKRTPSVTPV LAHDPEIVQD 360 RQAEKRWPKQ QVQALIQFRS SMEGSFQEPG PKQHLWEVIS ARMARLGFSR SAKRCKEKWE 420 NINKYFRRSK SKGRVDGKKK KCPYFALLDE LYNDKGRGGM LLAACSAGEE GTDLQAVSDG 480 LEPEVGQGRT EGITSGGRQA AGGGDGEAAL TGEASDSGGM CVEMVSGGGG STGGGGGFCS 540 SEEGLRGELS ACLLDAVEGR VKEQEMAMAT ANAAMGLGAE GVESQRRTFS KAWHVVLHDH 600 QTTGGEHRGE GHCARDSWGG AVPASEGVGQ VGVAADKGMR EEERGGNNAS TADEGSGEDA 660 EGGGLRVSGM IVQGEAQCDR EMGGTGVGLV DEENQAVVVK KKKKKKQKGA LVGPGVGKVL 720 GNKFVTAGGG GGGAGAAAAA VGMVSKSTRI QQLEGMVKGL VNSQQEQQKQ LMEYLSRSEQ 780 ERLKRDEERR QQEEARLARE QARAAERESA LMALVQKLTC NPAELPTQGT AGALPSLSTP 840 SENGGT

Sequence ? help Back to Top

Protein Sequence Length: 846 aa Download sequence

MEPAFQSANS LQKGHLWEEV GRKMSDLGYQ RSAKKCKEKW ENVTKYYRKT KESSKSGGAD  60
ARNYRYYAEL ERFYREGGES ALAAAAAARS SQGGDGNGGA SEESEEEEHE GLGGQEVEEE  120
EDELVESGGK RKRKRRGDVE EALLSMERMM KRILYCHHQQ QQRMFETIDK REKDRLAKEE  180
EWRRQEQARL AHEQKLRESE HVSAANRESA LVIILQKLAA GMAPGCPQPL SLPLLAASLS  240
SPTKPSVNAC ALPTPALGAE AFPPQQAHGV AGMTMAMGGG TPATVFAPAG TAIARGSAAT  300
PASTLLAGGG AKGSGPVATV GSEGGADAGA ESPATAAIPV AKRTPSVTPV LAHDPEIVQD  360
RQAEKRWPKQ QVQALIQFRS SMEGSFQEPG PKQHLWEVIS ARMARLGFSR SAKRCKEKWE  420
NINKYFRRSK SKGRVDGKKK KCPYFALLDE LYNDKGRGGM LLAACSAGEE GTDLQAVSDG  480
LEPEVGQGRT EGITSGGRQA AGGGDGEAAL TGEASDSGGM CVEMVSGGGG STGGGGGFCS  540
SEEGLRGELS ACLLDAVEGR VKEQEMAMAT ANAAMGLGAE GVESQRRTFS KAWHVVLHDH  600
QTTGGEHRGE GHCARDSWGG AVPASEGVGQ VGVAADKGMR EEERGGNNAS TADEGSGEDA  660
EGGGLRVSGM IVQGEAQCDR EMGGTGVGLV DEENQAVVVK KKKKKKQKGA LVGPGVGKVL  720
GNKFVTAGGG GGGAGAAAAA VGMVSKSTRI QQLEGMVKGL VNSQQEQQKQ LMEYLSRSEQ  780
ERLKRDEERR QQEEARLARE QARAAERESA LMALVQKLTC NPAELPTQGT AGALPSLSTP  840
SENGGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	136	KRKRKRR
2	131	136	RKRKRR
3	496	504	GGRQAAGGG
4	700	706	KRKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	7e-26	Trihelix family protein