PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG63575.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 678aa MW: 72567.4 Da PI: 6.9243

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG63575.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.7	1.1e-11	378	453	2	70
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + l+L++ +r ++++++r + k +We+++k+m+ g+ r++ C +kw+nl ykki++ ++ GBG63575.1 378 WSTDDQLLLVRCKReqdmhlaGLGHNYGRMRTKDWKWEDIAKQMANAGCPREADDCMKKWDNLFLNYKKIQRFQNA 453 8888999999999944443334444555778**************************************9987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence
MADVLRRLPL LVLVIVLFLF VVFLIVVFLH NCLSCRPWNT RRKRRASMRK PHTDRPMANM 60 QAGAPQVAGQ GGSLPSTAAA QRRYDPSAYS HLQSWEMPLP PSDEEVEAEE LGTLSLASGS 120 TQLLFSQTLI AGGSASKEGG EFRSLLEAGL DRDDDGEVDP RFGLSSGSAR EASRTFIIED 180 QPSPRSLQRP RGEHTEQSTL RGGASLTARA GPSSTTRQRG ASTPPVDPLR KTLPARSGVS 240 AAAERISGVA AAPARNSVGR SNMPNTAPTP DDELRGDPAC RLVVRPQPTV ENITEGVSNM 300 RAHNDGVDEN DGAGDDADDG YREDVEAVDD DSDAPIRPLG KAGGTGRGRD RGGGRGRSAG 360 RGSRVADEDN AGKSAVYWST DDQLLLVRCK REQDMHLAGL GHNYGRMRTK DWKWEDIAKQ 420 MANAGCPREA DDCMKKWDNL FLNYKKIQRF QNASGEASFF RLSNEERKDH NFKFWMERAL 480 YNEIHGGMLG NHTIFPPNIV DTDNPDGVMA PRRGGSGQAR GKKRDAVTEQ TAGGSGGGRH 540 TTRTKRSCQD ASSVSGAHLD GDGWGRPNDG EGKNETGYPA MEEVARMEHD QITLVTTPQG 600 RHREEAGTGI SAATPRAQKA LGERGSGGAA TPPVQQAVGD RGFVGVGDAA MLGVQAQVRG 660 AAAVVGEAAS TPHETGGG

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence

MADVLRRLPL LVLVIVLFLF VVFLIVVFLH NCLSCRPWNT RRKRRASMRK PHTDRPMANM  60
QAGAPQVAGQ GGSLPSTAAA QRRYDPSAYS HLQSWEMPLP PSDEEVEAEE LGTLSLASGS  120
TQLLFSQTLI AGGSASKEGG EFRSLLEAGL DRDDDGEVDP RFGLSSGSAR EASRTFIIED  180
QPSPRSLQRP RGEHTEQSTL RGGASLTARA GPSSTTRQRG ASTPPVDPLR KTLPARSGVS  240
AAAERISGVA AAPARNSVGR SNMPNTAPTP DDELRGDPAC RLVVRPQPTV ENITEGVSNM  300
RAHNDGVDEN DGAGDDADDG YREDVEAVDD DSDAPIRPLG KAGGTGRGRD RGGGRGRSAG  360
RGSRVADEDN AGKSAVYWST DDQLLLVRCK REQDMHLAGL GHNYGRMRTK DWKWEDIAKQ  420
MANAGCPREA DDCMKKWDNL FLNYKKIQRF QNASGEASFF RLSNEERKDH NFKFWMERAL  480
YNEIHGGMLG NHTIFPPNIV DTDNPDGVMA PRRGGSGQAR GKKRDAVTEQ TAGGSGGGRH  540
TTRTKRSCQD ASSVSGAHLD GDGWGRPNDG EGKNETGYPA MEEVARMEHD QITLVTTPQG  600
RHREEAGTGI SAATPRAQKA LGERGSGGAA TPPVQQAVGD RGFVGVGDAA MLGVQAQVRG  660
AAAVVGEAAS TPHETGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-09	Trihelix family protein