PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG63754.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

HD-ZIP

Protein Properties

Length: 426aa MW: 46507.2 Da PI: 8.3604

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG63754.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54	2.9e-17	255	309	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq + Le+ F+++ +++ +++ LA++l+L rqV vWFqNrRa+ k GBG63754.1 255 RKKLRLTREQSQLLEQSFKEHTTLNPKQKNALARQLNLRPRQVEVWFQNRRARTK 309 788899***********************************************98 PP
2	HD-ZIP_I/II	121	6e-39	255	346	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl++eq++lLE+sF+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr +++lkeen++L+ke ++L++++k GBG63754.1 255 RKKLRLTREQSQLLEQSFKEHTTLNPKQKNALARQLNLRPRQVEVWFQNRRARTKLKQTEVDFEVLKRFCETLKEENRKLHKELQDLKSAIK 346 69**************************************************************************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MILSDDRDRL RTPRDLDRLQ ALSSSGRETS GGQPRCRSSS PSSSTTLKMC TDESEEYSIE 60 RRSRSPPACL SPSRFESDPV RFDSDPVRYD PYAVRFDPLP VCSSGHSSPP VTLNLMIPSW 120 RQSTAVTTTT THPTPTASKP QALRPQAPSG PGLQTAALSF RSGDDSMDDS SAERPATPSG 180 GAGGLGGLRG IDMNQVPCIP PEEEAELRGE QADSARLHAH PSLLVKRERE PSPPRPSGVS 240 AGNGNSDEEE GTTTRKKLRL TREQSQLLEQ SFKEHTTLNP KQKNALARQL NLRPRQVEVW 300 FQNRRARTKL KQTEVDFEVL KRFCETLKEE NRKLHKELQD LKSAIKVVPP CIISQDLCMP 360 LTAATLAMCP SCERITSLDS SSNGRNASGL GTGLSTGLGF PKAELAFLKP TIPGFSHFAH 420 PPAACS

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MILSDDRDRL RTPRDLDRLQ ALSSSGRETS GGQPRCRSSS PSSSTTLKMC TDESEEYSIE  60
RRSRSPPACL SPSRFESDPV RFDSDPVRYD PYAVRFDPLP VCSSGHSSPP VTLNLMIPSW  120
RQSTAVTTTT THPTPTASKP QALRPQAPSG PGLQTAALSF RSGDDSMDDS SAERPATPSG  180
GAGGLGGLRG IDMNQVPCIP PEEEAELRGE QADSARLHAH PSLLVKRERE PSPPRPSGVS  240
AGNGNSDEEE GTTTRKKLRL TREQSQLLEQ SFKEHTTLNP KQKNALARQL NLRPRQVEVW  300
FQNRRARTKL KQTEVDFEVL KRFCETLKEE NRKLHKELQD LKSAIKVVPP CIISQDLCMP  360
LTAATLAMCP SCERITSLDS SSNGRNASGL GTGLSTGLGF PKAELAFLKP TIPGFSHFAH  420
PPAACS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	254	260	TRKKLRL
2	304	312	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-48	HD-ZIP family protein