PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG65279.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 998aa MW: 110092 Da PI: 8.2894

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG65279.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29	2.8e-09	251	326	2	70
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + aL++++r ++++l k ++ +We+v ++++ g++r+++ C +kw+nl +++kk+ + ++ GBG65279.1 251 WSVGDTIALVRVKRdqdvyivGLGHSLAHMKTREWKWEDVRARLEIMGVTRKAIDCVKKWDNLMQQFKKVHKFQNL 326 7888888999999966666666777888899**************************************9987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 998 aa Download sequence
MLTCCAFCFP DDRMDRRLTC GRPAGMTARA TNRQRSAGSV AKQAYDPMLY AHLPSHEIPL 60 PPSDDEGEDA RSSTLSLGSG STQDWAPTQS CGGWRAESPW SYTSLLNEGL CNDDGNAAVD 120 LSVQLSSSSG AAATHTRIIN PHPDGDCAEQ LWAECGQALR QAGTETITRG LQPLHVDEGD 180 NAAVQEPLDC DDADGDEDCN FDDLPEIRPL ASKVRNSGAS AKKGPTPRNR RNKKMDDNTG 240 GSDGEGGWNF WSVGDTIALV RVKRDQDVYI VGLGHSLAHM KTREWKWEDV RARLEIMGVT 300 RKAIDCVKKW DNLMQQFKKV HKFQNLSGRK DYFKLASSAR RSEGFSFVMD PSVYDDMEAM 360 TKRDHTIHPK NLADTGKTGG VRCRQAQGLE GNPWPMRVEG RHPMPAVPFF CFFLLDVLHV 420 LGECFMRDLR SQERQGHVLK GLCGSRIVAD GGGVGGAALV VGGGGGGEVV GERMGGGMGL 480 LCANAVWNVV VTCVVVDDAD RRRSDVGARP SAPCYRGVCA PSRIKVVRFW RLQHRRSPHV 540 LHSEHNHAEH PIAFLLLALD RCRVLAADIS RLLVGDFFSV VNDHRRGSSR LLVMSTFRVV 600 YNARIPHRGA LRRRRRRRAE EEEAPKDIVS TLQGSGCQRS SDHIVARRLV TPPPEAQHVR 660 ARDTPKAKEV VDVGGEDDEP LESPRQRNVT RGAMATVVRA RGATNKRPPQ GGLPSMPSQL 720 HPRNTADEGG SMERGGGGEI QQEARVVGGG GGSLMRVREL QAMWHPRRER ERSFQLWSGR 780 WHVARTMRSA SACRPPSVVM LTSSTSLTRI VDPAQLQQAI SRAAAVENIA LRILHGWVFK 840 SGNCPRGYNL VFQYALESVA TDIARAMWYG EEWSNVVSAV VCAHAIHLSM DLPLWFTGAN 900 IEDRPEDDDM AAYQESTVIC IAHAFRVAVQ MGVNVDGGFI SHDRLSSVAN CFRLLLAPSI 960 WLMRMSGDDL RSHYEAFYFA KLFAKPTLVA FMHPSFKH

Sequence ? help Back to Top

Protein Sequence Length: 998 aa Download sequence

MLTCCAFCFP DDRMDRRLTC GRPAGMTARA TNRQRSAGSV AKQAYDPMLY AHLPSHEIPL  60
PPSDDEGEDA RSSTLSLGSG STQDWAPTQS CGGWRAESPW SYTSLLNEGL CNDDGNAAVD  120
LSVQLSSSSG AAATHTRIIN PHPDGDCAEQ LWAECGQALR QAGTETITRG LQPLHVDEGD  180
NAAVQEPLDC DDADGDEDCN FDDLPEIRPL ASKVRNSGAS AKKGPTPRNR RNKKMDDNTG  240
GSDGEGGWNF WSVGDTIALV RVKRDQDVYI VGLGHSLAHM KTREWKWEDV RARLEIMGVT  300
RKAIDCVKKW DNLMQQFKKV HKFQNLSGRK DYFKLASSAR RSEGFSFVMD PSVYDDMEAM  360
TKRDHTIHPK NLADTGKTGG VRCRQAQGLE GNPWPMRVEG RHPMPAVPFF CFFLLDVLHV  420
LGECFMRDLR SQERQGHVLK GLCGSRIVAD GGGVGGAALV VGGGGGGEVV GERMGGGMGL  480
LCANAVWNVV VTCVVVDDAD RRRSDVGARP SAPCYRGVCA PSRIKVVRFW RLQHRRSPHV  540
LHSEHNHAEH PIAFLLLALD RCRVLAADIS RLLVGDFFSV VNDHRRGSSR LLVMSTFRVV  600
YNARIPHRGA LRRRRRRRAE EEEAPKDIVS TLQGSGCQRS SDHIVARRLV TPPPEAQHVR  660
ARDTPKAKEV VDVGGEDDEP LESPRQRNVT RGAMATVVRA RGATNKRPPQ GGLPSMPSQL  720
HPRNTADEGG SMERGGGGEI QQEARVVGGG GGSLMRVREL QAMWHPRRER ERSFQLWSGR  780
WHVARTMRSA SACRPPSVVM LTSSTSLTRI VDPAQLQQAI SRAAAVENIA LRILHGWVFK  840
SGNCPRGYNL VFQYALESVA TDIARAMWYG EEWSNVVSAV VCAHAIHLSM DLPLWFTGAN  900
IEDRPEDDDM AAYQESTVIC IAHAFRVAVQ MGVNVDGGFI SHDRLSSVAN CFRLLLAPSI  960
WLMRMSGDDL RSHYEAFYFA KLFAKPTLVA FMHPSFKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	604	616	RIPHRGALRRRRR
2	608	617	RGALRRRRRR
3	612	617	RRRRRR
4	612	618	RRRRRRR
5	613	618	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-07	Trihelix family protein