PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG65430.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

bHLH

Protein Properties

Length: 1248aa MW: 129070 Da PI: 5.2713

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG65430.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.5e-12	1108	1153	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR ri +++ eL+e++P+a K + a++L +A+ Y+ksLq GBG65430.1 1108 HSLAERARRGRISECIKELQEIVPNA-----NKGDTASVLDEAITYVKSLQ 1153 999********************8.....69***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1248 aa Download sequence
MERDHRENVF RYSVGFGLCG EEWAGGGGGG SMTTMTSPSL LAQPVEARDR LAGGGVEGVV 60 RDTGAAAMVD EPMEEEEEGG RRRRRRRRSC NVWREQVHRT RMEDAAKEDG YGEGDNVEEE 120 GDDDDEDDDD DDDDDDDDDD DDDDDDDDDD GREEEDEDDL ELKEAIAMAS TRRISTRELH 180 SSSLPFAEYI DCMYHSTAMG STYDGTPIPT HEINCTLSVG AAAALAGVEG LDIAAAGERG 240 AAAAAAAVSV GVGGQGGGGG GGGGGEMDMI RMEPGSDVNL SSSSSSFFPE RLGIGPGDRA 300 NMTADRFAAM TVAACFRSQG VDSSGCHVSS ATCLPPYGNS CSLDVATTYL PFTPSPFPSA 360 CSSFMCLSSS SSSIPRPSAS PSPFPCTAAV AMAPLPSITS AILTNSIRTN DDRHVSTGGG 420 PLTFIPVAAS GGVHIDAAAA AADAAAAVEG RHVSRRSAAL GAPGVMGASA VLTGGDRVSD 480 LTPMAVSGAE ESPACSSSSS SPSSSSSSPS SSSSSMYKTS PEFAIMAAVG MLGRLDRREL 540 NSSHHHHYPS SPPPPPPHQH HHHHHHHRQL LTRHNQHHHQ LLGYHLHHQG EQNGHQRSYY 600 HERQQAADLH LKLDGYGGRS PRFRDAAMEE PSAAASSPQY RERFHEEEEE EEEEEEEEVL 660 AAVSPAHHDG MVVVSSIASS ALGSRMIAGA AVDLPVQGGG GGGGGGGGGG GGEVIGMELS 720 PSVARDPDGR RRLTTTEQRL AGRSSLDDHH HANQSPSSSS YHPLGNQSWS SSYDPRDTPC 780 SSSYDPRGTL SLSYDGLAVA SHSIGDPAHP SPAFHPPTGD MSAAGELLLP LQMRQRQQQQ 840 QGIAQRQHQQ IPTQQSQSQQ KQGVGHCDRP GSESSSSQQI PTNNEEVDGL SQLPPEVLEA 900 WESIQLRHRA AAAKLEISRA AARAHSAAAA AAAAVKHVVA SSAGSPLGHH HHHQQQQQQH 960 LVSLHHGLAA GGSVISPPPP PPPPPAAAAA AMAGVTSDSG PSSSSSLSSS AFLGDGSRLA 1020 SASCLPAAAA AAAAAGGTLS VSRSAGRIVI NSGTSLSSSI QYSSSSSSSS SSSSSSSSSS 1080 SSAAAAAAAC KIPGQKRRVK RGMATDRHSL AERARRGRIS ECIKELQEIV PNANKGDTAS 1140 VLDEAITYVK SLQKQLMCLC TSRSRHRLVV SVPGPGTRPG TRPGTTAGIG ERGPSAEGTT 1200 PSTTGRPGGG GGGGGDENSG EVSEPPPPPP PPPIMGGGES TSDPSAPL

Sequence ? help Back to Top

Protein Sequence Length: 1248 aa Download sequence

MERDHRENVF RYSVGFGLCG EEWAGGGGGG SMTTMTSPSL LAQPVEARDR LAGGGVEGVV  60
RDTGAAAMVD EPMEEEEEGG RRRRRRRRSC NVWREQVHRT RMEDAAKEDG YGEGDNVEEE  120
GDDDDEDDDD DDDDDDDDDD DDDDDDDDDD GREEEDEDDL ELKEAIAMAS TRRISTRELH  180
SSSLPFAEYI DCMYHSTAMG STYDGTPIPT HEINCTLSVG AAAALAGVEG LDIAAAGERG  240
AAAAAAAVSV GVGGQGGGGG GGGGGEMDMI RMEPGSDVNL SSSSSSFFPE RLGIGPGDRA  300
NMTADRFAAM TVAACFRSQG VDSSGCHVSS ATCLPPYGNS CSLDVATTYL PFTPSPFPSA  360
CSSFMCLSSS SSSIPRPSAS PSPFPCTAAV AMAPLPSITS AILTNSIRTN DDRHVSTGGG  420
PLTFIPVAAS GGVHIDAAAA AADAAAAVEG RHVSRRSAAL GAPGVMGASA VLTGGDRVSD  480
LTPMAVSGAE ESPACSSSSS SPSSSSSSPS SSSSSMYKTS PEFAIMAAVG MLGRLDRREL  540
NSSHHHHYPS SPPPPPPHQH HHHHHHHRQL LTRHNQHHHQ LLGYHLHHQG EQNGHQRSYY  600
HERQQAADLH LKLDGYGGRS PRFRDAAMEE PSAAASSPQY RERFHEEEEE EEEEEEEEVL  660
AAVSPAHHDG MVVVSSIASS ALGSRMIAGA AVDLPVQGGG GGGGGGGGGG GGEVIGMELS  720
PSVARDPDGR RRLTTTEQRL AGRSSLDDHH HANQSPSSSS YHPLGNQSWS SSYDPRDTPC  780
SSSYDPRGTL SLSYDGLAVA SHSIGDPAHP SPAFHPPTGD MSAAGELLLP LQMRQRQQQQ  840
QGIAQRQHQQ IPTQQSQSQQ KQGVGHCDRP GSESSSSQQI PTNNEEVDGL SQLPPEVLEA  900
WESIQLRHRA AAAKLEISRA AARAHSAAAA AAAAVKHVVA SSAGSPLGHH HHHQQQQQQH  960
LVSLHHGLAA GGSVISPPPP PPPPPAAAAA AMAGVTSDSG PSSSSSLSSS AFLGDGSRLA  1020
SASCLPAAAA AAAAAGGTLS VSRSAGRIVI NSGTSLSSSI QYSSSSSSSS SSSSSSSSSS  1080
SSAAAAAAAC KIPGQKRRVK RGMATDRHSL AERARRGRIS ECIKELQEIV PNANKGDTAS  1140
VLDEAITYVK SLQKQLMCLC TSRSRHRLVV SVPGPGTRPG TRPGTTAGIG ERGPSAEGTT  1200
PSTTGRPGGG GGGGGDENSG EVSEPPPPPP PPPIMGGGES TSDPSAPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	86	RRRRRR
2	81	87	RRRRRRR
3	81	88	RRRRRRRR
4	82	87	RRRRRR
5	82	88	RRRRRRR
6	82	89	RRRRRRRR
7	83	88	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	6e-19	bHLH family protein