PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GBG65616.1
Organism
Chara braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
Family Trihelix
Protein Properties Length: 422aa    MW: 46173.5 Da    PI: 7.9691
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GBG65616.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.33.4e-12145225281
    trihelix   2 WtkqevlaLiearr.emeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                 Wt + + aLi+a++ e+ e+ +  ++ ++  +W  +++k+ ++g++r ++ C+ +w+nl   yk ++e e++  ++s+s +++
  GBG65616.1 145 WTIRDTYALIRAKKdELAEDTNpfKKMSRSMKWGIIADKLLRQGIKRDAEDCRRRWQNLVALYKLVNECEND--PGSRSYWSM 225
                 ************9943444455223568999***************************************98..677777765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    
MVVLQRPPLE VTPPSTRQQP SHSQGIQQEH PGVVSAIPTA HRSHAGGVLF PPFYAAFQPA  60
FPPAFQAAFP PADATRDRSD VPPSDNNMSL PSTSAGAGDG VGSGAASPPA SVYDVECWQD  120
DQEQASPGSS RKDRQRKEFN RKANWTIRDT YALIRAKKDE LAEDTNPFKK MSRSMKWGII  180
ADKLLRQGIK RDAEDCRRRW QNLVALYKLV NECENDPGSR SYWSMTGEER KKKGMVKNLE  240
RAIYDGVHSV ITGRQSLNRP CMTSAFVDGE PLRALPGLTQ QLIAASEMLS STRDSDDEGQ  300
ERAGREDPNA TAAWRSGDDP SFGAANLKRK ASSDLAIDNM AEALERQAGA FALAFQQTSD  360
RTASILERQG DIMMEQSQAM VAAFNRMARA MNSLARSLGR EENNSLPRAL AGGGNTFGNP  420
FS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131138RKDRQRKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.14e-12Trihelix family protein