PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG66236.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1050aa MW: 114934 Da PI: 6.7922

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG66236.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.3	9.3e-09	569	656	2	85
trihelix 2 WtkqevlaLiearremeerlrrg.....klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W e+laL++a++e ++ ++ + + +W+ + k+++ g++r C +wenl++ ++ki ++e r + ss + p f ++ GBG66236.1 569 WGLWETLALVRAKQEEANERANQhgglvRPARERWALIVMKLKSWGIHRDVSNCARRWENLSRCFRKIYRHEVYRLNCSS-ERPSFWRM 656 9999********98888877523344699***************************************99955554.67777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1050 aa Download sequence
MPTSILPPRT GTGGERRLTA AESSSTIPTS NPGRCCHHLH RHRHSHRHNH SHRYGADWKH 60 RSSPIFLVAS TSNKKRGIAA ITDTPRAGSS RGALPCGISA LGSRSRCGQA SRKIDCDALL 120 LQVRQVDETR RGGCWMQLPK APSSVGLNVP FDKDPNGRGW RRRWLSVLQA AAARDDERGA 180 ILGRSEGATS LRSSSGIEDR SFVQGESLQV EENPQGLDKP PAPKRQLHLD VESIDFVDVS 240 TTILFLGPIV CRDATCIRIV NILYIQMQYV PSVPAGAIAN VHLTVMVNAP QSSWPAIDMP 300 SAVHASEMKV DADHHVRGAT DGNIKLEEFP SSILRLAVLD GNECTNQWVC EETAAKALYS 360 DEEEDWSLHE SKGGVCNAEL GGSPEAACVL NSVRRREVQG NAGAAKEAVL SGSRNDCGRY 420 NDKIDCATTS AVEDQVDHGE DAVKEKPGLE RQTLILEMIM NNPGTRGRRL RRRNTCCDSD 480 CVRDFDLPCN DTIQCTKPGS EKLFDTDHQE LDATLIFSKS CPEASPEANP REAGQCVTPI 540 SWTSLDKASL GPVRRRHGLS RDVLRSTNWG LWETLALVRA KQEEANERAN QHGGLVRPAR 600 ERWALIVMKL KSWGIHRDVS NCARRWENLS RCFRKIYRHE VYRLNCSSER PSFWRMSFSE 660 RKELNMPFQM EPRVYKAMEE FFTSVDECGL KAETTLALCA GEGSPGDTTD DFVKGETEDC 720 GRIKVEVAPM DLIPSVPAAV EGQGCCSSSP NAGDEGDGPN SGTRPAVDAG SNCPSSIATA 780 ISDLTKAVLG GGEAFTSAYA MAAQRETDLV ADSQDVVLEQ MQVVREADSL VDAGHQMLLS 840 TLRGINTTLD SILSNMARTD PQGALCNVTR SVRACDKLQT IHSCQWSARA LKSVMDELIV 900 VPVHGVTETQ LVNLFYRAMP KPLRGYFFEK SKESTITYDT PSREVVAVEA QSMPVSTFWH 960 KDLDKGKKWK GHTISGQDNN DHQDSDLLYF AKFAGICFVA AATIKYGSVA LPSLAKPNLL 1020 SALIMVMVPM GVSAIALVSA SAEEKGDRQM

Sequence ? help Back to Top

Protein Sequence Length: 1050 aa Download sequence

MPTSILPPRT GTGGERRLTA AESSSTIPTS NPGRCCHHLH RHRHSHRHNH SHRYGADWKH  60
RSSPIFLVAS TSNKKRGIAA ITDTPRAGSS RGALPCGISA LGSRSRCGQA SRKIDCDALL  120
LQVRQVDETR RGGCWMQLPK APSSVGLNVP FDKDPNGRGW RRRWLSVLQA AAARDDERGA  180
ILGRSEGATS LRSSSGIEDR SFVQGESLQV EENPQGLDKP PAPKRQLHLD VESIDFVDVS  240
TTILFLGPIV CRDATCIRIV NILYIQMQYV PSVPAGAIAN VHLTVMVNAP QSSWPAIDMP  300
SAVHASEMKV DADHHVRGAT DGNIKLEEFP SSILRLAVLD GNECTNQWVC EETAAKALYS  360
DEEEDWSLHE SKGGVCNAEL GGSPEAACVL NSVRRREVQG NAGAAKEAVL SGSRNDCGRY  420
NDKIDCATTS AVEDQVDHGE DAVKEKPGLE RQTLILEMIM NNPGTRGRRL RRRNTCCDSD  480
CVRDFDLPCN DTIQCTKPGS EKLFDTDHQE LDATLIFSKS CPEASPEANP REAGQCVTPI  540
SWTSLDKASL GPVRRRHGLS RDVLRSTNWG LWETLALVRA KQEEANERAN QHGGLVRPAR  600
ERWALIVMKL KSWGIHRDVS NCARRWENLS RCFRKIYRHE VYRLNCSSER PSFWRMSFSE  660
RKELNMPFQM EPRVYKAMEE FFTSVDECGL KAETTLALCA GEGSPGDTTD DFVKGETEDC  720
GRIKVEVAPM DLIPSVPAAV EGQGCCSSSP NAGDEGDGPN SGTRPAVDAG SNCPSSIATA  780
ISDLTKAVLG GGEAFTSAYA MAAQRETDLV ADSQDVVLEQ MQVVREADSL VDAGHQMLLS  840
TLRGINTTLD SILSNMARTD PQGALCNVTR SVRACDKLQT IHSCQWSARA LKSVMDELIV  900
VPVHGVTETQ LVNLFYRAMP KPLRGYFFEK SKESTITYDT PSREVVAVEA QSMPVSTFWH  960
KDLDKGKKWK GHTISGQDNN DHQDSDLLYF AKFAGICFVA AATIKYGSVA LPSLAKPNLL  1020
SALIMVMVPM GVSAIALVSA SAEEKGDRQM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	7e-15	Trihelix family protein