PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG66507.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 475aa MW: 52667.5 Da PI: 5.7857

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG66507.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.4	3.7e-08	270	348	2	70
trihelix 2 WtkqevlaLiearr.......emeerlr...rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + +L++a+r +m+++++ +++ k +We+v ++ + g++r+ + C +kw++l +++kk+ + ++ GBG66507.1 270 WSVGDTIVLVRAKRdqdlyfsSMGHNFGcmkTREWKWEHWEDVRLRLDKAGVTRKVVDCGKKWDKLMQQFKKVHKFQQL 348 88889999999999555555545555443223457888899999999*************************9987776 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MLYAHLPSHE IPLMSTDDEC EDVRSSVVPL GSGSTKDWVG TQSFSGRQAE TPWSYTSMLN 60 EGLCCDDGNA GVDLTFQLST SSGVVVTHTH IINPHPDGDC DEQTWVARCG ARDGRQAQAL 120 RDSGGNRYLS SMASAGGGGS GDHRPEWMRS SPAPGSGSRT PRRRQQQDYA SATGADALRP 180 HGTESMMKGV QRLDVNEGDD AADHEPYDND DMDGDEGYNS EELPDIRPFG RKAKGGRGVG 240 RKGSTTRNRT DKKMDDDTCG SDGEGAINFW SVGDTIVLVR AKRDQDLYFS SMGHNFGCMK 300 TREWKWEHWE DVRLRLDKAG VTRKVVDCGK KWDKLMQQFK KVHKFQQLSS GRDYFKLLLV 360 ASIWLMRMAG DDLRSHYEAF YFAKLMAKPT LIASMYRSCE HRRSVVRATN VVTERLGKAN 420 ATLGEYPKYI PDWEICGIVF GFDASIAGQD DAKRLDWLGG GPLEDDKADD GKDDA

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MLYAHLPSHE IPLMSTDDEC EDVRSSVVPL GSGSTKDWVG TQSFSGRQAE TPWSYTSMLN  60
EGLCCDDGNA GVDLTFQLST SSGVVVTHTH IINPHPDGDC DEQTWVARCG ARDGRQAQAL  120
RDSGGNRYLS SMASAGGGGS GDHRPEWMRS SPAPGSGSRT PRRRQQQDYA SATGADALRP  180
HGTESMMKGV QRLDVNEGDD AADHEPYDND DMDGDEGYNS EELPDIRPFG RKAKGGRGVG  240
RKGSTTRNRT DKKMDDDTCG SDGEGAINFW SVGDTIVLVR AKRDQDLYFS SMGHNFGCMK  300
TREWKWEHWE DVRLRLDKAG VTRKVVDCGK KWDKLMQQFK KVHKFQQLSS GRDYFKLLLV  360
ASIWLMRMAG DDLRSHYEAF YFAKLMAKPT LIASMYRSCE HRRSVVRATN VVTERLGKAN  420
ATLGEYPKYI PDWEICGIVF GFDASIAGQD DAKRLDWLGG GPLEDDKADD GKDDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-06	Trihelix family protein