PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG66927.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

SRS

Protein Properties

Length: 1639aa MW: 184946 Da PI: 5.8151

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG66927.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	103.3	4.1e-32	1401	1533	30	153
DUF702 30 srgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletss.........lPeevsseavfrc 117 srgf C thvkstWvpaakrrerqq++aaa+++ + +++a++kr+r+ + +++s++ + ++ + l + lP+ev +e + ++ GBG66927.1 1401 SRGFICPTHVKSTWVPAAKRRERQQAEAAAKANGEPVHNAAKTKRPRTVSLASASTTGLGPDPGSTRQDLLAIGPvqgiggkssLPTEVTVETLLKS 1497 9***************************999999999****9955555444443333333333333332556777777********* PP DUF702 118 vrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 v+v+++ +g e++Y+++v+igGhvfkG+Ly+ G + GBG66927.1 1498 VKVTGIVEGVLEVGYHASVKIGGHVFKGVLYNTGFD 1533 ********************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 1639 aa Download sequence
MRRAIRSAHC SEQLAAREDV VSSLLDFSML QARQERLTLH IAALRRLLAI LSDPDRTLPI 60 IPVRLGTSTR VYSVLWGSGS QGDFIHPLVV KEARLPTIGS PTPISVTLGD DKTQRFFDQT 120 VTDLPFFLTL EPTDRSPASR RHRSSAHFDV MEMRYDFNLG TPWSRQFRST EADWATNTLV 180 LKTKCGQTYR VPFIGTTATP CPDPPPPEPS VPTPSPSITV TSPWQFAHFI RQNDVTFFMV 240 DVTDLLHYDP PCPDAELIPL EPDPPSISMA PISTSVPLPS IESIPPSRVD ADAEELARYT 300 ADLEPAVRDL IRAYHDVFPS LFSYADIPPM RDVEHSIQLV PDYRVHHQAP YRLSIPEATE 360 LKRQLEELLR PGFIKPATPR GVHLSSLLAK RMELSVSAST IAVSTATRYH QIRVAVADQP 420 KTAFRSRFGH YEFTVMPFGL TNAPATFQRA MNDIFRYIQE QYVLVYLDDI LVYSRTLEEH 480 LRHLRDVLDR LRRHGFYAKL SKCRFAQHKV DFLGHYVSDQ GLNIDDVKIT AIAEWPTPTY 540 AKQLHSFLGL TSYYSNFIRG YVRYSYVLTS TLLRKNPPWA WTPLHEDAFR ALKKAVTCAP 600 VLHLPDFDRH FILTTDASDF AVGVVFSQVF PSSPDSSHPR IPRFPPPTPT TASRLTPTRP 660 ATDEPSIDYS PTIAEDDTVE SRSGDCPIAF YSRQLLPAEI NYTVDEREVL AVVYAAPHWR 720 HYLHGAPFTV RTDNSVVRAF LTKSKLTPRQ GRWWRDLSEF SLTTKHIKGE TNWVADALSW 780 RPDHNLEQIQ LAATVTTVHH LVIDEFRNQY RHCPDYRDIH ATLQSGKTVP NYFLGDNGLV 840 YWHGSQGTRE PHICVPSTRQ LRVRAVAEFH DQVVANHMGF HKTLARVSRL YVWPKHKDFV 900 KDYVAECPTC QKVNSANHLP YGLLQPLPIP EGHWQSITMD FIGPLRPPSP RGHDAILVVV 960 NRFTKRAHFV PCRYAISSRE VADIVFDRVV RDHGLPLSII SDRDPRFTSR FWRRLHKWDL 1020 YLAHEEIAYN HVVSPATGIS PYYCDLDYHP RVPANFLRPS QMHPDTSCPM LDDWVAHMTS 1080 IMKTAHEQIA ASQTRMATRA NRSRINHPFK VGDDVLIDAL HLQLEADTLR KFRHRFFGPC 1140 RILQAIGSNT ASSPVSFRVK LPDYLRQARE HDFYHISLLR PYRRPFEHFA RRLYERPPPI 1200 MVDDHKEFLV SDIIGRRVTD DNPPHVEYLV RWKGYPDEEA TWEPLEHLQH TRMLVHAYDR 1260 ARRAGLTAPP QPTDPLSSHS ADETAEVETA PSEADLQQQP DASERPQRTL PTTPYDIHID 1320 DDDNDDDDDV DDDDVDDDDV DDDDDDDDDD DVDDEDDDDD DDDDDDDDDV DDVDVDDVDD 1380 DDDDDDDDDD DDDDDDAQRP SRGFICPTHV KSTWVPAAKR RERQQAEAAA KANGEPVHNA 1440 AKTKRPRTVS LASASTTGLG PDPGSTRQDL LAIGPVQGIG GKSSLPTEVT VETLLKSVKV 1500 TGIVEGVLEV GYHASVKIGG HVFKGVLYNT GFDTGNSTTM GTSSSDQAAA HCQDLGNLLA 1560 LKGGPSASLL EAAGLYGPSA ALLGSGPKSG VLSEDHLAAN VQSMVRRLSR EWAHMRMIEG 1620 TPGAMWEKNT HNKFASEST

Sequence ? help Back to Top

Protein Sequence Length: 1639 aa Download sequence

MRRAIRSAHC SEQLAAREDV VSSLLDFSML QARQERLTLH IAALRRLLAI LSDPDRTLPI  60
IPVRLGTSTR VYSVLWGSGS QGDFIHPLVV KEARLPTIGS PTPISVTLGD DKTQRFFDQT  120
VTDLPFFLTL EPTDRSPASR RHRSSAHFDV MEMRYDFNLG TPWSRQFRST EADWATNTLV  180
LKTKCGQTYR VPFIGTTATP CPDPPPPEPS VPTPSPSITV TSPWQFAHFI RQNDVTFFMV  240
DVTDLLHYDP PCPDAELIPL EPDPPSISMA PISTSVPLPS IESIPPSRVD ADAEELARYT  300
ADLEPAVRDL IRAYHDVFPS LFSYADIPPM RDVEHSIQLV PDYRVHHQAP YRLSIPEATE  360
LKRQLEELLR PGFIKPATPR GVHLSSLLAK RMELSVSAST IAVSTATRYH QIRVAVADQP  420
KTAFRSRFGH YEFTVMPFGL TNAPATFQRA MNDIFRYIQE QYVLVYLDDI LVYSRTLEEH  480
LRHLRDVLDR LRRHGFYAKL SKCRFAQHKV DFLGHYVSDQ GLNIDDVKIT AIAEWPTPTY  540
AKQLHSFLGL TSYYSNFIRG YVRYSYVLTS TLLRKNPPWA WTPLHEDAFR ALKKAVTCAP  600
VLHLPDFDRH FILTTDASDF AVGVVFSQVF PSSPDSSHPR IPRFPPPTPT TASRLTPTRP  660
ATDEPSIDYS PTIAEDDTVE SRSGDCPIAF YSRQLLPAEI NYTVDEREVL AVVYAAPHWR  720
HYLHGAPFTV RTDNSVVRAF LTKSKLTPRQ GRWWRDLSEF SLTTKHIKGE TNWVADALSW  780
RPDHNLEQIQ LAATVTTVHH LVIDEFRNQY RHCPDYRDIH ATLQSGKTVP NYFLGDNGLV  840
YWHGSQGTRE PHICVPSTRQ LRVRAVAEFH DQVVANHMGF HKTLARVSRL YVWPKHKDFV  900
KDYVAECPTC QKVNSANHLP YGLLQPLPIP EGHWQSITMD FIGPLRPPSP RGHDAILVVV  960
NRFTKRAHFV PCRYAISSRE VADIVFDRVV RDHGLPLSII SDRDPRFTSR FWRRLHKWDL  1020
YLAHEEIAYN HVVSPATGIS PYYCDLDYHP RVPANFLRPS QMHPDTSCPM LDDWVAHMTS  1080
IMKTAHEQIA ASQTRMATRA NRSRINHPFK VGDDVLIDAL HLQLEADTLR KFRHRFFGPC  1140
RILQAIGSNT ASSPVSFRVK LPDYLRQARE HDFYHISLLR PYRRPFEHFA RRLYERPPPI  1200
MVDDHKEFLV SDIIGRRVTD DNPPHVEYLV RWKGYPDEEA TWEPLEHLQH TRMLVHAYDR  1260
ARRAGLTAPP QPTDPLSSHS ADETAEVETA PSEADLQQQP DASERPQRTL PTTPYDIHID  1320
DDDNDDDDDV DDDDVDDDDV DDDDDDDDDD DVDDEDDDDD DDDDDDDDDV DDVDVDDVDD  1380
DDDDDDDDDD DDDDDDAQRP SRGFICPTHV KSTWVPAAKR RERQQAEAAA KANGEPVHNA  1440
AKTKRPRTVS LASASTTGLG PDPGSTRQDL LAIGPVQGIG GKSSLPTEVT VETLLKSVKV  1500
TGIVEGVLEV GYHASVKIGG HVFKGVLYNT GFDTGNSTTM GTSSSDQAAA HCQDLGNLLA  1560
LKGGPSASLL EAAGLYGPSA ALLGSGPKSG VLSEDHLAAN VQSMVRRLSR EWAHMRMIEG  1620
TPGAMWEKNT HNKFASEST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	2e-12	SRS family protein