PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG67166.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

HD-ZIP

Protein Properties

Length: 408aa MW: 45452.9 Da PI: 8.9146

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG67166.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.3e-18	5	63	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps ++r +L ++ +++ +q+kvWFqNrR +ek+ GBG67166.1 5 KYVRYTNEQVEALERVYNECPKPSSARRSQLLQEYpilaNIEPKQIKVWFQNRRCREKQ 63 5678*****************************************************97 PP
2	START	30.9	6e-11	131	223	4	96
HHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.EEEEEEEE CS START 4 eeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.galqlmva 96 + e++ ka+ ++ W ++ +ng+++ + ++ +g a+r+ g+v m++a v++ l+d+ qW + ++k e+l +++ g++++ ++ GBG67166.1 131 SDMVGEFLGKATGTAVDWANMPGTKNGPDTFEMVFILRGGPGIASRVYGLVLMEPA-KVASALKDRSQWLRECRKSEVLGEFRTDqGTVEVVYT 223 566679999*********************99888889************.7777777777****************977776655 PP
3	START	49.9	9.1e-17	225	302	125	203
EEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS START 125 ivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrq 203 i+++S + ++ + + +vRae++pSg+ i+p+ ++ s + +v+hvdlk +++++lr+l++s++a ++++++++l+++ GBG67166.1 225 ICERSMSGGTNLEPVPAFVRAEMHPSGYYIKPCNGN-SIIYIVDHVDLKPLSVPEVLRPLYESSAALAQRQTMEALRYL 302 78888888888777899**************888.*************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MDSGKYVRYT NEQVEALERV YNECPKPSSA RRSQLLQEYP ILANIEPKQI KVWFQNRRCR 60 EKQRKEATRL INMNAKLSAL NKMLMEENER LMKQTTELSM EVHVLRQELA KYRPPPQSNG 120 ENLGLGDQMA SDMVGEFLGK ATGTAVDWAN MPGTKNGPDT FEMVFILRGG PGIASRVYGL 180 VLMEPAKVAS ALKDRSQWLR ECRKSEVLGE FRTDQGTVEV VYTQICERSM SGGTNLEPVP 240 AFVRAEMHPS GYYIKPCNGN SIIYIVDHVD LKPLSVPEVL RPLYESSAAL AQRQTMEALR 300 YLRRLASDSN LDSPRSNGHQ ALAWRGIAER IARGFNEAVN GFPDDGWVPL MGDGMDDVSV 360 AARPLNGQRH SGSNPAMSGN SEALRASEGG VLCAKASMLL QVSKRSKK

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MDSGKYVRYT NEQVEALERV YNECPKPSSA RRSQLLQEYP ILANIEPKQI KVWFQNRRCR  60
EKQRKEATRL INMNAKLSAL NKMLMEENER LMKQTTELSM EVHVLRQELA KYRPPPQSNG  120
ENLGLGDQMA SDMVGEFLGK ATGTAVDWAN MPGTKNGPDT FEMVFILRGG PGIASRVYGL  180
VLMEPAKVAS ALKDRSQWLR ECRKSEVLGE FRTDQGTVEV VYTQICERSM SGGTNLEPVP  240
AFVRAEMHPS GYYIKPCNGN SIIYIVDHVD LKPLSVPEVL RPLYESSAAL AQRQTMEALR  300
YLRRLASDSN LDSPRSNGHQ ALAWRGIAER IARGFNEAVN GFPDDGWVPL MGDGMDDVSV  360
AARPLNGQRH SGSNPAMSGN SEALRASEGG VLCAKASMLL QVSKRSKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60690.1	1e-131	HD-ZIP family protein