PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG67301.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 850aa MW: 92467.5 Da PI: 5.9273

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG67301.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.1	6.9e-11	89	165	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekk 70 Wt ++ aLi+a+r+ ++++ r + k +W++v k++ + g+ +r+++ C +kw+nl +++k + + +++ GBG67301.1 89 WTVEHMIALIQAKRDQDSHFAglahttgRMETKTWKWDDVEKRLVHMGVtSRKAVDCGKKWDNLYQQFKTVHKFMGE 165 ************999999966555444679999*****99999799***************99876665 PP

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence
MRGVAKISVG ADDILRDEDG GVAEDCEADG GAGNDDEVDD ENMEIRPLGR KWGGSTAAKK 60 LPETRTGRRG KKGVEDALAG EGSKSRDFWT VEHMIALIQA KRDQDSHFAG LAHTTGRMET 120 KTWKWDDVEK RLVHMGVTSR KAVDCGKKWD NLYQQFKTVH KFMGESGKPN FFTLTPGERK 180 ERGFDFRMDE RVYSEMAAMT RSDHTIHPTN LADTGATGGV QMPGPHGGRN ESGGSEGGGD 240 GQNDDQGSTK DSISGGGVGG GNKEKNVRQQ TFDTIADVMK EHGSLMASTV DSASKRQCSI 300 LTRQCDILER EVEVQKEHYF KADQANLMMC EALMKIAKAI RERSGHIPKS KRQRIDDASS 360 SQTEDFLADE VAMVDAQGTT GVVRLGFGRD GVSREQLQAA RRSVVGGAAG TVPRSPNTAA 420 VVVTAARVAG QISAAAGQGQ PRQALPLQHV LATGGGHTAT AQKGDATATA SRTVAADHTA 480 KGSFVEGAER VGVDDVGCDD GRRDRKREGN DGDDRPLVPT GKGAPKEDEL QEKAKLWVDC 540 DAFWGQGRGK PLREAVGECT DYFVAVANGD AGAEPPSMLI MPPNDVPRFK IDDPAQREPA 600 LRRARSVERV VLRTIHGWIF KSQSRWTGFS RAESYITVDF ATDLARAVWQ ALEWSRVVSP 660 ALVYHTVAMK MDVPLWFAGV KIEDRLEDDD MVARQEATVL LLAECWTDAL WCGQWADGGC 720 VKQERLSRLA DCLRALLCAV MWIMRMGGDD DRSHYEAWSY ASMVAKPTMI AAGSYIFNWR 780 RHVVDSANLV LDRLGKAHLT LGDYPQCIPE WCDCGLAFGH NASLKNAAEA AKHGWIDSGP 840 AADDDGDDGK

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence

MRGVAKISVG ADDILRDEDG GVAEDCEADG GAGNDDEVDD ENMEIRPLGR KWGGSTAAKK  60
LPETRTGRRG KKGVEDALAG EGSKSRDFWT VEHMIALIQA KRDQDSHFAG LAHTTGRMET  120
KTWKWDDVEK RLVHMGVTSR KAVDCGKKWD NLYQQFKTVH KFMGESGKPN FFTLTPGERK  180
ERGFDFRMDE RVYSEMAAMT RSDHTIHPTN LADTGATGGV QMPGPHGGRN ESGGSEGGGD  240
GQNDDQGSTK DSISGGGVGG GNKEKNVRQQ TFDTIADVMK EHGSLMASTV DSASKRQCSI  300
LTRQCDILER EVEVQKEHYF KADQANLMMC EALMKIAKAI RERSGHIPKS KRQRIDDASS  360
SQTEDFLADE VAMVDAQGTT GVVRLGFGRD GVSREQLQAA RRSVVGGAAG TVPRSPNTAA  420
VVVTAARVAG QISAAAGQGQ PRQALPLQHV LATGGGHTAT AQKGDATATA SRTVAADHTA  480
KGSFVEGAER VGVDDVGCDD GRRDRKREGN DGDDRPLVPT GKGAPKEDEL QEKAKLWVDC  540
DAFWGQGRGK PLREAVGECT DYFVAVANGD AGAEPPSMLI MPPNDVPRFK IDDPAQREPA  600
LRRARSVERV VLRTIHGWIF KSQSRWTGFS RAESYITVDF ATDLARAVWQ ALEWSRVVSP  660
ALVYHTVAMK MDVPLWFAGV KIEDRLEDDD MVARQEATVL LLAECWTDAL WCGQWADGGC  720
VKQERLSRLA DCLRALLCAV MWIMRMGGDD DRSHYEAWSY ASMVAKPTMI AAGSYIFNWR  780
RHVVDSANLV LDRLGKAHLT LGDYPQCIPE WCDCGLAFGH NASLKNAAEA AKHGWIDSGP  840
AADDDGDDGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	349	354	KSKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	9e-06	Trihelix family protein