PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG68065.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 555aa MW: 60151.2 Da PI: 6.2102

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG68065.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.9	3.1e-14	278	353	1	79
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 +W +e+laLi+ar +++++ ++ l k++W v + m+++gf rs qCk +w+n+ yk+i ++e + s++ s + GBG68065.1 278 EWGIEETLALIQARVSKDNNGAQR-LTKGDWNVVEAMMHSKGFDRSIAQCKLRWKNVWSTYKEIWDHETR--SGRPSYW 353 5**************9998776.9***************************************998..4555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MADCQQGGTS SSTDTRAVNV VTCAPATSEI PSKADATSEV PSKADDRSEV PSKHDCASKA 60 LVKEDANVES GCKPSDGLEL LSEVVLTTIV REQSLDTGLP ASAVTTDNTG RWPTPVMQTP 120 ENTVAVPFEP SPHAVVVKSP TASPEILEIS ASDFFRSVDN QRAERRRSGR VASHIRHSLL 180 RTFTDVAGPA VDAVIFSGCA SSCPSGRVVR PMGPLPMTSM SPYAVAGVED SESGDTELVN 240 VDNFIDMTVG VDSKSGSQSS DSDADGAPHG TQLEDSQEWG IEETLALIQA RVSKDNNGAQ 300 RLTKGDWNVV EAMMHSKGFD RSIAQCKLRW KNVWSTYKEI WDHETRSGRP SYWAMSARDR 360 ALHGFTIHLA REWYDELNAY NERLLGELQR LITTAPPMHH ESPAAAGGAR VAGNARAGTS 420 VRTTSGAPPP MDIATVPRLV EHNLRQIVGA RPPSRRGGNR GSAKRQRTIL NAVERSLIRI 480 CETAIKCSNK TAEAWERHTE KMLSGQKDCA VFLADKMDRG WKLIGDVVRE TATQMAEDTS 540 SADSEEFVAR CRRSP

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MADCQQGGTS SSTDTRAVNV VTCAPATSEI PSKADATSEV PSKADDRSEV PSKHDCASKA  60
LVKEDANVES GCKPSDGLEL LSEVVLTTIV REQSLDTGLP ASAVTTDNTG RWPTPVMQTP  120
ENTVAVPFEP SPHAVVVKSP TASPEILEIS ASDFFRSVDN QRAERRRSGR VASHIRHSLL  180
RTFTDVAGPA VDAVIFSGCA SSCPSGRVVR PMGPLPMTSM SPYAVAGVED SESGDTELVN  240
VDNFIDMTVG VDSKSGSQSS DSDADGAPHG TQLEDSQEWG IEETLALIQA RVSKDNNGAQ  300
RLTKGDWNVV EAMMHSKGFD RSIAQCKLRW KNVWSTYKEI WDHETRSGRP SYWAMSARDR  360
ALHGFTIHLA REWYDELNAY NERLLGELQR LITTAPPMHH ESPAAAGGAR VAGNARAGTS  420
VRTTSGAPPP MDIATVPRLV EHNLRQIVGA RPPSRRGGNR GSAKRQRTIL NAVERSLIRI  480
CETAIKCSNK TAEAWERHTE KMLSGQKDCA VFLADKMDRG WKLIGDVVRE TATQMAEDTS  540
SADSEEFVAR CRRSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	2e-07	Trihelix family protein