PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG68076.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 940aa MW: 99815.5 Da PI: 8.4789

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG68076.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.2	2.1e-08	301	350	20	69
trihelix 20 rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 ++ r k ++ +W +v +++++ g+er+ ++C +kw+nl +++kk+ + ++ GBG68076.1 301 SYARMKPREWKWLDVEQRLKKVGVEREVERCGKKWDNLMQQFKKVHHFQG 350 5677788999**********************************987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 940 aa Download sequence
MDGRQAVCRS AGGEGGGQRA GQSPSRGSRA VERSEYTHLP PHLQPLPDTS DEEEDDRRSR 60 AMPLGSGSTQ EWAATELCGS RAPSYGQSYT QLLQQGLSGD EGDGGVNLTF GLCSGSSSSS 120 TRTVLVDNRP DDDGGQVTVV ARPSKSPASS VRVASGNNKD PRTQQYRAPS ASRGASARPS 180 WMLSPSALST NLSAARNRGN AGSMIAGSRE ERLRVVDDEN DGDAPDVDGN DQDLSDDDCG 240 GGEDNAGRVS PSNQSSMGGK GGRAKASVRN GRRGKKAMGK GSDVEADGDA EGGRLQGIGT 300 SYARMKPREW KWLDVEQRLK KVGVEREVER CGKKWDNLMQ QFKKVHHFQG LSGKRDFFQF 360 TGKERLSKGF SFNMDRAVYD EILGSTAKRH TMNPKNVADT GAPGGVRLPS ANSADPESVG 420 DRDAVARLDD DDDVSTRGYS QTTGGPGGFG KRKSTRQQTF DALLECMKKH GALVASTMES 480 NSKRQCSVQI RQCVALEAEV EVQKKHYAPS DEVSKLMCHA LLEIAKTIHE RRGRSTGKQA 540 VDAALRKKRG SHVASKQRNL VQGASALAIH ADAEEWVAEG DDSHVESDFD ESEEIPLKRK 600 SSGRPIGALR MDDVGERRCA GGRGQIDQDA DVAPRAATGR AGGSAATQQN RAPLPRVNEP 660 PAAQEVLVCG RTPSIPRQTT ATDVGVAAQG IAQGIASRSP ANDDRRASMV VVARTAEVAR 720 EGAATAGGAS HTGEGGRSGG AATVGASHAA EGARAGGGNV GEGSRAGAVA GVGEDDEALA 780 NRVRSRAHEK GWTEASKALA TVGNAIVKLM QEVRLYLVAV ARGVQPPAIR RSIVMPHTTI 840 MQHKIDDESE FSDAQDRALK AQTIALRVIH GWVFMSARRQ RGYHAVYGYA LNHVATDIAG 900 AIWMGEDWRV CVSPMVFHTT MSCHCGSSAL TSKTCTRTTS

Sequence ? help Back to Top

Protein Sequence Length: 940 aa Download sequence

MDGRQAVCRS AGGEGGGQRA GQSPSRGSRA VERSEYTHLP PHLQPLPDTS DEEEDDRRSR  60
AMPLGSGSTQ EWAATELCGS RAPSYGQSYT QLLQQGLSGD EGDGGVNLTF GLCSGSSSSS  120
TRTVLVDNRP DDDGGQVTVV ARPSKSPASS VRVASGNNKD PRTQQYRAPS ASRGASARPS  180
WMLSPSALST NLSAARNRGN AGSMIAGSRE ERLRVVDDEN DGDAPDVDGN DQDLSDDDCG  240
GGEDNAGRVS PSNQSSMGGK GGRAKASVRN GRRGKKAMGK GSDVEADGDA EGGRLQGIGT  300
SYARMKPREW KWLDVEQRLK KVGVEREVER CGKKWDNLMQ QFKKVHHFQG LSGKRDFFQF  360
TGKERLSKGF SFNMDRAVYD EILGSTAKRH TMNPKNVADT GAPGGVRLPS ANSADPESVG  420
DRDAVARLDD DDDVSTRGYS QTTGGPGGFG KRKSTRQQTF DALLECMKKH GALVASTMES  480
NSKRQCSVQI RQCVALEAEV EVQKKHYAPS DEVSKLMCHA LLEIAKTIHE RRGRSTGKQA  540
VDAALRKKRG SHVASKQRNL VQGASALAIH ADAEEWVAEG DDSHVESDFD ESEEIPLKRK  600
SSGRPIGALR MDDVGERRCA GGRGQIDQDA DVAPRAATGR AGGSAATQQN RAPLPRVNEP  660
PAAQEVLVCG RTPSIPRQTT ATDVGVAAQG IAQGIASRSP ANDDRRASMV VVARTAEVAR  720
EGAATAGGAS HTGEGGRSGG AATVGASHAA EGARAGGGNV GEGSRAGAVA GVGEDDEALA  780
NRVRSRAHEK GWTEASKALA TVGNAIVKLM QEVRLYLVAV ARGVQPPAIR RSIVMPHTTI  840
MQHKIDDESE FSDAQDRALK AQTIALRVIH GWVFMSARRQ RGYHAVYGYA LNHVATDIAG  900
AIWMGEDWRV CVSPMVFHTT MSCHCGSSAL TSKTCTRTTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-07	Trihelix family protein