PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG68094.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 774aa MW: 83562.1 Da PI: 8.5424

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG68094.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.7	1.4e-08	5	54	21	70
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 r k ++ +W +v ++++ g+ r+ ++C++kw+nl +++kk+ + ++ GBG68094.1 5 CTRMKPREWKWLDVEHNLKKVGVDREDERCRKKWDNLMQQFKKVHHFQGL 54 5567788899*********************************9887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence
MGTACTRMKP REWKWLDVEH NLKKVGVDRE DERCRKKWDN LMQQFKKVHH FQGLSGKQDF 60 FQFSGKERLS KGFNFNMDRA VYDEILGSTA KSHTINPKNV VDNGAPSGVR LPSATSEEPE 120 SVGDGALLQG TTTTRTGRRE AVAHRAPPSW MICAFRRDCC DIARHEEQLT SVLTILAFVA 180 FIAFLAAFLA AFIAFLAILA AFIAFLAILT PVVSAITPVT LPSRHVVAAS VSIPPSLSSC 240 SSSIRAIVQN VFRAVNDSDD IIATPVITAE TTITICCRAL FSVDAEIYSW RLVCLEVGVS 300 RVMSSRGSGR AKSAGKLAVE AAIRERKSSH VANKQRKLVE GAFPLPKYVE DDKWVASQVK 360 SDFEEDEEVS LKRKSKRRGS GALRIDDVGE RRGRGGRAMM ENVIDVNAAA ASGRCGGTTV 420 GQQHRAAVAR ANEAPKVQEM LASTCKPSVR GARAALLCRS SEGLHRGGAA HTGEGARAGG 480 AATGGAPHTR EGARAGRPVA AGASQAAEVA RAGGAKAGGV PQAGGGARAG DVASQGEDDE 540 ALVNRVHKRN ARDGIEAASK LWVDDIRIWN ETVCVSPMVF HITLEMDMKL PLWFVGANIE 600 DRHENDEMAA YQEASIQRLV GAFTSAISTA EGIDGGRVSH ERVKSVAEAM RIMLAAAMWL 660 MRMSGDDHRS HYGEWVFVQL TTKPTLIASM HRSFDAPRHI VQAVTAITDK LAKPPRTLVA 720 PQLYIPDWAL IGVKFSHDAT LSSPMEAKKL DWLGTGPPKD EDDDKCNDEG GEGG

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence

MGTACTRMKP REWKWLDVEH NLKKVGVDRE DERCRKKWDN LMQQFKKVHH FQGLSGKQDF  60
FQFSGKERLS KGFNFNMDRA VYDEILGSTA KSHTINPKNV VDNGAPSGVR LPSATSEEPE  120
SVGDGALLQG TTTTRTGRRE AVAHRAPPSW MICAFRRDCC DIARHEEQLT SVLTILAFVA  180
FIAFLAAFLA AFIAFLAILA AFIAFLAILT PVVSAITPVT LPSRHVVAAS VSIPPSLSSC  240
SSSIRAIVQN VFRAVNDSDD IIATPVITAE TTITICCRAL FSVDAEIYSW RLVCLEVGVS  300
RVMSSRGSGR AKSAGKLAVE AAIRERKSSH VANKQRKLVE GAFPLPKYVE DDKWVASQVK  360
SDFEEDEEVS LKRKSKRRGS GALRIDDVGE RRGRGGRAMM ENVIDVNAAA ASGRCGGTTV  420
GQQHRAAVAR ANEAPKVQEM LASTCKPSVR GARAALLCRS SEGLHRGGAA HTGEGARAGG  480
AATGGAPHTR EGARAGRPVA AGASQAAEVA RAGGAKAGGV PQAGGGARAG DVASQGEDDE  540
ALVNRVHKRN ARDGIEAASK LWVDDIRIWN ETVCVSPMVF HITLEMDMKL PLWFVGANIE  600
DRHENDEMAA YQEASIQRLV GAFTSAISTA EGIDGGRVSH ERVKSVAEAM RIMLAAAMWL  660
MRMSGDDHRS HYGEWVFVQL TTKPTLIASM HRSFDAPRHI VQAVTAITDK LAKPPRTLVA  720
PQLYIPDWAL IGVKFSHDAT LSSPMEAKKL DWLGTGPPKD EDDDKCNDEG GEGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-06	Trihelix family protein