PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG68314.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 698aa MW: 75573.5 Da PI: 9.7367

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG68314.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45	2.8e-14	443	516	2	68
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 W+ +++ +Li+a+r+ + +l+ r k ++ +W +v+k+++ g+ r+p++C +kw+nl +++kk+ + + GBG68314.1 443 WSVKHIITLIRAKRDQDAHLQgmghayaRMKPREWKWNDVAKRLKNVGVDRKPEKCGKKWDNLMQQFKKVHHFQ 516 9***********7766666433333367899**********************************98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MSKPVASPRC TPRCNSGLGF SRGGKPANGR QMRIFEAAQR VQKTTASVCR QARVAVCRTS 60 QLRCRPCSLP SSAVVVVHRM ADSFRKLPLL LLAIFLLVVV VVLHVCFVGS APRRRRRRTT 120 PMKAVRTDSG QGSPRGGGEP VVSRRVVGSS SPACRLSLGV GNSSLPPHLQ SLPDSSDEEK 180 REGRALTVPL GSGSTQKRSW TELCGGSGGV HGQSFTELLA PGLDGEEGHG GSNLSSGLST 240 GRCGSHTRTV IVNPHVGDDD EQLTVVDRSS KSASAQQWQG RATYISRSTQ GRPSFMQSPA 300 PGCAASNLGR RRGIVEEGGG YLDDVVDDRD GRLVWAEERR KIREGREEAI RRGVERLRMD 360 RQVEEVEEPH AGLPSEDDDN DGAGEAGDGN GGYASPSQNN DGGGKRGKTK ATSGNGRGRP 420 KKAQAKAKDG EGDGDAEEKR NFWSVKHIIT LIRAKRDQDA HLQGMGHAYA RMKPREWKWN 480 DVAKRLKNVG VDRKPEKCGK KWDNLMQQFK KVHHFQSSSG GIDFFQLNGK ERVRHGFNFN 540 MDRALYDEIE GSSGFNETIS PKNIADTGAR GGVRLPSTTT ADPEAVGDVD AGAGGEDEDE 600 GSTRGSSQTS GNPHGFGKRK STRQQTFEAM TECMDKHGAL MAATMDSASK RQCSIQLRQC 660 EALEAEVQVQ KTHYAASDEV SKLMCHALLD IAKAIRER

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MSKPVASPRC TPRCNSGLGF SRGGKPANGR QMRIFEAAQR VQKTTASVCR QARVAVCRTS  60
QLRCRPCSLP SSAVVVVHRM ADSFRKLPLL LLAIFLLVVV VVLHVCFVGS APRRRRRRTT  120
PMKAVRTDSG QGSPRGGGEP VVSRRVVGSS SPACRLSLGV GNSSLPPHLQ SLPDSSDEEK  180
REGRALTVPL GSGSTQKRSW TELCGGSGGV HGQSFTELLA PGLDGEEGHG GSNLSSGLST  240
GRCGSHTRTV IVNPHVGDDD EQLTVVDRSS KSASAQQWQG RATYISRSTQ GRPSFMQSPA  300
PGCAASNLGR RRGIVEEGGG YLDDVVDDRD GRLVWAEERR KIREGREEAI RRGVERLRMD  360
RQVEEVEEPH AGLPSEDDDN DGAGEAGDGN GGYASPSQNN DGGGKRGKTK ATSGNGRGRP  420
KKAQAKAKDG EGDGDAEEKR NFWSVKHIIT LIRAKRDQDA HLQGMGHAYA RMKPREWKWN  480
DVAKRLKNVG VDRKPEKCGK KWDNLMQQFK KVHHFQSSSG GIDFFQLNGK ERVRHGFNFN  540
MDRALYDEIE GSSGFNETIS PKNIADTGAR GGVRLPSTTT ADPEAVGDVD AGAGGEDEDE  600
GSTRGSSQTS GNPHGFGKRK STRQQTFEAM TECMDKHGAL MAATMDSASK RQCSIQLRQC  660
EALEAEVQVQ KTHYAASDEV SKLMCHALLD IAKAIRER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	118	RRRRRR
2	113	119	RRRRRRT
3	114	120	RRRRRRT
4	416	424	GRGRPKKAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-08	Trihelix family protein