PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG68727.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 545aa MW: 60144.6 Da PI: 7.174

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG68727.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.7	1.7e-09	311	363	18	70
trihelix 18 eerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 ++++r k k+ +We+ sk+m+ g + + C +kw+nl + ykki++ ++ GBG68727.1 311 SHNYGRMKTKEWKWEDMSKRMANAGRPKDADDCMKKWDNLFQNYKKIQRFQNA 363 67888999***************************************987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MADVRRRLPL LVLXVVVFLI VVFLYVCFXW RPWKQQRKRR ASTRRAAGER LMAGMQARPA 60 AAAGQGGVRS SAAEPRRRYN PSMYTHLESW DTPLPPSDEE LEKEELSTLP LASGSTQLWS 120 QTVRAGGSAS DGGGEFTSLL HQGLRDDDDG GVDLRFELCS GGGREASRTF IIDGDHSTRG 180 VEHGGSLHTE QSTLRRAALV TCVVGPSPAG RQHASTAPSV DRLGGARSLM PACTTPVESG 240 VRDEGTCRAP VRPRPTVENI TRGVSNMRAH SDGGEDDVGF GDDANEGMRE DVEVGDDDDE 300 REQDMHLARL SHNYGRMKTK EWKWEDMSKR MANAGRPKDA DDCMKKWDNL FQNYKKIQRF 360 QNASRRPNFF RLANEERKEH NFKFWMDKAL YNEIHAGMVG NHTIFPPNVA DTGSPDGVQL 420 PRRGEGGGES VCSEAVGEGC PDERSSARES DSNAGSGAGG GKRKNARQQA FKSISDVMER 480 HGALMSSTIK SSSKRQASIS TRQCDILEQE VAVQKAHYTE SDETQRMMCQ TLFEIVAAIR 540 GWSAM

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MADVRRRLPL LVLXVVVFLI VVFLYVCFXW RPWKQQRKRR ASTRRAAGER LMAGMQARPA  60
AAAGQGGVRS SAAEPRRRYN PSMYTHLESW DTPLPPSDEE LEKEELSTLP LASGSTQLWS  120
QTVRAGGSAS DGGGEFTSLL HQGLRDDDDG GVDLRFELCS GGGREASRTF IIDGDHSTRG  180
VEHGGSLHTE QSTLRRAALV TCVVGPSPAG RQHASTAPSV DRLGGARSLM PACTTPVESG  240
VRDEGTCRAP VRPRPTVENI TRGVSNMRAH SDGGEDDVGF GDDANEGMRE DVEVGDDDDE  300
REQDMHLARL SHNYGRMKTK EWKWEDMSKR MANAGRPKDA DDCMKKWDNL FQNYKKIQRF  360
QNASRRPNFF RLANEERKEH NFKFWMDKAL YNEIHAGMVG NHTIFPPNVA DTGSPDGVQL  420
PRRGEGGGES VCSEAVGEGC PDERSSARES DSNAGSGAGG GKRKNARQQA FKSISDVMER  480
HGALMSSTIK SSSKRQASIS TRQCDILEQE VAVQKAHYTE SDETQRMMCQ TLFEIVAAIR  540
GWSAM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-06	Trihelix family protein