PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG69325.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 724aa MW: 79755.7 Da PI: 5.9485

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG69325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.7	2.9e-13	299	375	2	71
trihelix 2 WtkqevlaLiearremeerlrrg.......klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W+ +e l+L++ +r+ ++ + ++ k k ++W +++k+m+++g++r +qC ++wen+ + y+k+ ++ek+ GBG69325.1 299 WSLNESLVLVQCKRDQDDYFANAgtnfsrmKTKDQKWMDIAKRMEKEGVRRDGEQCMKRWENIFRWYRKVWDREKDS 375 ************66666664322222228***************************************99973 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
MQHNLHHRFD PNLYSHLPPH QQPLPDDTTW TPPPSTLGFA WGSTQTSYDT PPRVESTGGG 60 VGPMYALLGE TRGRGRHPFD LQLSPTATMD VSRTVLVQRS GQGGGASTQT MHASVLDDGV 120 SMHRPNHMSR LALSQAAPAG SVPCRQPAAG AAMQDQRADV GGVAESPRCV ECIVCRFNSL 180 RATSEGDGAG AAMQERRLDL CGVAESARCV ERIVCRYNSS RPTGDGDVGG REGGASKPDH 240 VDVEDDDADD EDEDEAPVKE AVSGRTKKQP SKVRGKAKGK DKEGDTNDEG GGSGARGNWS 300 LNESLVLVQC KRDQDDYFAN AGTNFSRMKT KDQKWMDIAK RMEKEGVRRD GEQCMKRWEN 360 IFRWYRKVWD REKDSGLQSY FLMTTKARKE KGYKFNLDRT LYDAIHIMQG NNQAVHPLNL 420 VDTGNAQGQQ SQQGEQSQAA AGGGEADTSA SENRGADTGD GCGRRSSSND IQGKRKNARQ 480 LAFEAVTDVM KTHSTVVAES VDRASKRQCD VLQRQCDIME REARTQERQC EVLNVGQRML 540 CEALLKIVGN SEIARGGHRG VVVTEVDIGH RNCVGVRRCE SMDIQMALRG RVLGRTITFY 600 EMRHRQGEKD GRLFDFVGEV TGQEVGHYEV DANGDTILNV VVALGYVDDM LREVVGYTTK 660 VGRAIPDRWE GGVDVLDDIV DLLMSNIANE HDDLMTVPAD FRVWPDPPLH DRPGLRGEIR 720 NIDE

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

MQHNLHHRFD PNLYSHLPPH QQPLPDDTTW TPPPSTLGFA WGSTQTSYDT PPRVESTGGG  60
VGPMYALLGE TRGRGRHPFD LQLSPTATMD VSRTVLVQRS GQGGGASTQT MHASVLDDGV  120
SMHRPNHMSR LALSQAAPAG SVPCRQPAAG AAMQDQRADV GGVAESPRCV ECIVCRFNSL  180
RATSEGDGAG AAMQERRLDL CGVAESARCV ERIVCRYNSS RPTGDGDVGG REGGASKPDH  240
VDVEDDDADD EDEDEAPVKE AVSGRTKKQP SKVRGKAKGK DKEGDTNDEG GGSGARGNWS  300
LNESLVLVQC KRDQDDYFAN AGTNFSRMKT KDQKWMDIAK RMEKEGVRRD GEQCMKRWEN  360
IFRWYRKVWD REKDSGLQSY FLMTTKARKE KGYKFNLDRT LYDAIHIMQG NNQAVHPLNL  420
VDTGNAQGQQ SQQGEQSQAA AGGGEADTSA SENRGADTGD GCGRRSSSND IQGKRKNARQ  480
LAFEAVTDVM KTHSTVVAES VDRASKRQCD VLQRQCDIME REARTQERQC EVLNVGQRML  540
CEALLKIVGN SEIARGGHRG VVVTEVDIGH RNCVGVRRCE SMDIQMALRG RVLGRTITFY  600
EMRHRQGEKD GRLFDFVGEV TGQEVGHYEV DANGDTILNV VVALGYVDDM LREVVGYTTK  660
VGRAIPDRWE GGVDVLDDIV DLLMSNIANE HDDLMTVPAD FRVWPDPPLH DRPGLRGEIR  720
NIDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-09	Trihelix family protein