PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG69643.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 2237aa MW: 250014 Da PI: 7.0488

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG69643.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.1	1.9e-12	1682	1757	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + + aLi+a+r+ + +l+ r k ++ +W +v+ ++++ g+ r++ +C +kw+nl +++kk+ + ++ GBG69643.1 1682 WSVDDIIALIRAKRDQDAHLQgmghayaRMKPREWKWLDVATRLKKVGVDREADRCGKKWDNLMQQFKKVHHFQGL 1757 99**********777766643333336789999********************************9887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 2237 aa Download sequence
MEEDHQRKSR GATEQITGAD GLAGTRSADV WRKHEDEKMV VVHLSGIDPC ITDQAPAAAV 60 KKTSTSITSM FFEIASVYSD RTAVIHPPVL KSRGVHLLNT GDEHLLKNGH IHLPRSSFRG 120 FVDSLESSDA KEKRTRAAAT TKNLPSSQTK IDNEQGQSSS RQLSEKCEKF EKSEKCEKSE 180 YCEDSGESEK CEEFEKCEET DQQMNEKETA YQFQPCETEG KVEYRERKAE CTEPKKVEYR 240 ERKVECIEPK KTEYTKRTVE IEYTKRKVEY TYKQLRRGVV NLAREIQRQV LKGREGESNE 300 GSGGGGGRGG GRGGMGERQA RGESDRGRGG GGGRRGGGRR GGGGGGGMGE KQASGCAAKN 360 GRCSMDEDSP LLRIGIFVDR SVEYIVGVLA SLYVGAAFVP FDTSWEDGGE RKQDCSPPIP 420 SHRPLGHVLA QQEDIHSLDA TAQNHKRALD DLNSRFQQLQ QTVAAPAANT SNMSDRLNAL 480 EIDMGTVKDG MQHQHTATQP LEQWICTAAA HPSSSEREST PKWDSQTIIL DSSKTDPVQW 540 FRKFELTLQL HYVSEHKNHA YLYSRLGGAC QAWLDNLLSK YGVIAADLHT KISWEDLKAA 600 WHKRFQVEPP EIKAMDKLLT FEQGTLPSVD WIAEYQRLTS VPDLQMGFKA IRHYFISRSC 660 PTLSNALTHV EDTLMTTAEL FDKATQIIIT NKEAKNLRSS AAGPSRDQHR PRVAVVAAAT 720 PFDQTSEARY DDNNAPLMYV RIQVGQASYN ALLDSGASRN FMSQSFMQRA GLGAQVRRKA 780 KPTAIKLADG KTQQLLNRYI EAVPVYFAPH ACEPVTFDIL DTDFDIILGM PWLASADHTV 840 NFHRRTLSVR NAFGAEVACT IPLPHRSIRC QVVTAKSFRA TCAYEQSEEI GLCFLRTVAV 900 ADASPTDLSL DPWVVRLLDE FADIFESPTG VVSDRPISHE IILEAGAVPP KGCIYRMSEE 960 ELEVLRAQLD DLLAKGWIRP SSSPYGAPVL FVWKKNKDLR LCIDYRKLNV QIVKNAGPLP 1020 RIDELLERLG GAKYFSKLDL KLGYHQISIR PNDRYKSAFK TWYGHFEWVV MPFGLTNAPT 1080 TFQAVMTNEF RAMLDRFVLV YLDDILIYSR SLEDHLGHLR RVLETLRRAK YKANRDKCEF 1140 VRQELEYLGH FVTPEGISPL SDKIQAIQEW PEPRNVTDVR SFLGLAGYYQ RFIKGYSKIV 1200 AHLNKLQCED RPFDFGEEAR ESFFALKAAL LFAEVLRIYD PLLPTRVTTD ASGYGIGAGL 1260 EQQDAVDWHP VEYFSKKVPI VHSIDDARKK ELLAFVHALK RWRHFLLGRS QFRWVTDNNP 1320 LVFYKTQDTV NSTIARWMAF IDQLDFFPDH IPGKSNRFAD AFSRRPDHCT AVYSTFEIDD 1380 DLRNSFIRGY QADPEFRDKY SNCSSPNPAP SHYRIQEGYL LVHTRGKDLL CVPSDSHLRT 1440 RLLGEFHDAP ATEHFGVNRT IGRLRERFCG RSAAVSRTVV VNPHPDDDGR EVTAVQRSPT 1500 SPAPLREASG NNKDPPRQQF RSPSVCRGAS ARPQWMQSPS PLSAGSSAGR RVGECRETAP 1560 AVADVGDAHD GREVWAEQRR LMRSVREESI TRGVQRLRVG EDGHDGEEAV GDAHDPDWND 1620 NGAEGGEDDA GYISRSKQAA AMGGRGGKTK SCGGNGRWGK RTAGKGSDAE GDVDGEGGRH 1680 FWSVDDIIAL IRAKRDQDAH LQGMGHAYAR MKPREWKWLD VATRLKKVGV DREADRCGKK 1740 WDNLMQQFKK VHHFQGLSGK QDFFQLSGKD RMSKGFNFNM DRAVYEEILG STAKNHTINL 1800 KNVADTGAQG GVRLPSASSA DPDGDGGAEH DDDDDDDGST KGSSQTTGGA DGFGKRKSTR 1860 QQTFEAMTEC MEKHGALMAS TVESNSKRHC SIAIRQCEAL EAEIEVQKKH YAALDEVDDL 1920 LFWNEREGFA IVKLIAEARG YLVAVARGEQ PPPIRRSIVL PHNSIPQHKI ADKSELNAAK 1980 ERALKVQGIA LRVIHGWVFK SQNRQRGYHA AYQYALNHAA TDIARAMWMG EDWRYCVSPM 2040 VVHHTLDMDM KLPLWFVGAD VEDMHEDDGL AAYQEASIQR LVGAFTSAVI IAEATDGGRV 2100 SHERLKTMVD AMRMMLAATV WLMRMAGDDH RAHYDAWVFV QLTAKPTLVA SMHRCFDARR 2160 HIMQAATVIT DKLASPPITL IDPPMYVPDW ASIGVKFSHD ATLSSPMEAK KVDWLGTGPS 2220 EDEDDGKGDE QGSGGGR

Sequence ? help Back to Top

Protein Sequence Length: 2237 aa Download sequence

MEEDHQRKSR GATEQITGAD GLAGTRSADV WRKHEDEKMV VVHLSGIDPC ITDQAPAAAV  60
KKTSTSITSM FFEIASVYSD RTAVIHPPVL KSRGVHLLNT GDEHLLKNGH IHLPRSSFRG  120
FVDSLESSDA KEKRTRAAAT TKNLPSSQTK IDNEQGQSSS RQLSEKCEKF EKSEKCEKSE  180
YCEDSGESEK CEEFEKCEET DQQMNEKETA YQFQPCETEG KVEYRERKAE CTEPKKVEYR  240
ERKVECIEPK KTEYTKRTVE IEYTKRKVEY TYKQLRRGVV NLAREIQRQV LKGREGESNE  300
GSGGGGGRGG GRGGMGERQA RGESDRGRGG GGGRRGGGRR GGGGGGGMGE KQASGCAAKN  360
GRCSMDEDSP LLRIGIFVDR SVEYIVGVLA SLYVGAAFVP FDTSWEDGGE RKQDCSPPIP  420
SHRPLGHVLA QQEDIHSLDA TAQNHKRALD DLNSRFQQLQ QTVAAPAANT SNMSDRLNAL  480
EIDMGTVKDG MQHQHTATQP LEQWICTAAA HPSSSEREST PKWDSQTIIL DSSKTDPVQW  540
FRKFELTLQL HYVSEHKNHA YLYSRLGGAC QAWLDNLLSK YGVIAADLHT KISWEDLKAA  600
WHKRFQVEPP EIKAMDKLLT FEQGTLPSVD WIAEYQRLTS VPDLQMGFKA IRHYFISRSC  660
PTLSNALTHV EDTLMTTAEL FDKATQIIIT NKEAKNLRSS AAGPSRDQHR PRVAVVAAAT  720
PFDQTSEARY DDNNAPLMYV RIQVGQASYN ALLDSGASRN FMSQSFMQRA GLGAQVRRKA  780
KPTAIKLADG KTQQLLNRYI EAVPVYFAPH ACEPVTFDIL DTDFDIILGM PWLASADHTV  840
NFHRRTLSVR NAFGAEVACT IPLPHRSIRC QVVTAKSFRA TCAYEQSEEI GLCFLRTVAV  900
ADASPTDLSL DPWVVRLLDE FADIFESPTG VVSDRPISHE IILEAGAVPP KGCIYRMSEE  960
ELEVLRAQLD DLLAKGWIRP SSSPYGAPVL FVWKKNKDLR LCIDYRKLNV QIVKNAGPLP  1020
RIDELLERLG GAKYFSKLDL KLGYHQISIR PNDRYKSAFK TWYGHFEWVV MPFGLTNAPT  1080
TFQAVMTNEF RAMLDRFVLV YLDDILIYSR SLEDHLGHLR RVLETLRRAK YKANRDKCEF  1140
VRQELEYLGH FVTPEGISPL SDKIQAIQEW PEPRNVTDVR SFLGLAGYYQ RFIKGYSKIV  1200
AHLNKLQCED RPFDFGEEAR ESFFALKAAL LFAEVLRIYD PLLPTRVTTD ASGYGIGAGL  1260
EQQDAVDWHP VEYFSKKVPI VHSIDDARKK ELLAFVHALK RWRHFLLGRS QFRWVTDNNP  1320
LVFYKTQDTV NSTIARWMAF IDQLDFFPDH IPGKSNRFAD AFSRRPDHCT AVYSTFEIDD  1380
DLRNSFIRGY QADPEFRDKY SNCSSPNPAP SHYRIQEGYL LVHTRGKDLL CVPSDSHLRT  1440
RLLGEFHDAP ATEHFGVNRT IGRLRERFCG RSAAVSRTVV VNPHPDDDGR EVTAVQRSPT  1500
SPAPLREASG NNKDPPRQQF RSPSVCRGAS ARPQWMQSPS PLSAGSSAGR RVGECRETAP  1560
AVADVGDAHD GREVWAEQRR LMRSVREESI TRGVQRLRVG EDGHDGEEAV GDAHDPDWND  1620
NGAEGGEDDA GYISRSKQAA AMGGRGGKTK SCGGNGRWGK RTAGKGSDAE GDVDGEGGRH  1680
FWSVDDIIAL IRAKRDQDAH LQGMGHAYAR MKPREWKWLD VATRLKKVGV DREADRCGKK  1740
WDNLMQQFKK VHHFQGLSGK QDFFQLSGKD RMSKGFNFNM DRAVYEEILG STAKNHTINL  1800
KNVADTGAQG GVRLPSASSA DPDGDGGAEH DDDDDDDGST KGSSQTTGGA DGFGKRKSTR  1860
QQTFEAMTEC MEKHGALMAS TVESNSKRHC SIAIRQCEAL EAEIEVQKKH YAALDEVDDL  1920
LFWNEREGFA IVKLIAEARG YLVAVARGEQ PPPIRRSIVL PHNSIPQHKI ADKSELNAAK  1980
ERALKVQGIA LRVIHGWVFK SQNRQRGYHA AYQYALNHAA TDIARAMWMG EDWRYCVSPM  2040
VVHHTLDMDM KLPLWFVGAD VEDMHEDDGL AAYQEASIQR LVGAFTSAVI IAEATDGGRV  2100
SHERLKTMVD AMRMMLAATV WLMRMAGDDH RAHYDAWVFV QLTAKPTLVA SMHRCFDARR  2160
HIMQAATVIT DKLASPPITL IDPPMYVPDW ASIGVKFSHD ATLSSPMEAK KVDWLGTGPS  2220
EDEDDGKGDE QGSGGGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	328	339	RGGGGGRRGGGR
2	330	338	GGGGRRGGG
3	331	339	GGGGRRGGG
4	332	340	GGGGRRGGG
5	336	344	GGGGRRGGG
6	337	345	GGGGRRGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-07	Trihelix family protein