PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG69956.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1042aa MW: 114048 Da PI: 6.5448

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG69956.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.8	1e-11	414	486	2	67
trihelix 2 WtkqevlaLiearremeerlrrg.......klkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 W+ +++ aLi+a+r+ + +++ k ++ +W++v++++ + r++++C +kw++l +++kk+ + GBG69956.1 414 WSVEHIIALIRAKRDQDAHMQGMghayawmKPREWKWQDVAQRLNNVAVDRNAEKCGKKWDSLMQQFKKVHHF 486 9***********9999999632334444799**********************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1042 aa Download sequence
MSQRSADTNI SGRTPAPNYA LTVGDRRRPR GFVAKSGRPF AALRSAAAIA APRCPVAAPR 60 GSLPRVHPWE RAATSTQKKV FDEGRQDGGT TGDPPVQWGA GRREAVRGEP VDRWQAPQRV 120 GYDALPPHLQ PLPGSSDEEE EVERRPQTVS LGSGSTQEWT ATELCGTGGD VYEQSFTELL 180 RPGLGEDEGD GHVNLSFGLS TGRSTTPSRT VLVRPHPGDE GGQLTVVDRS ARTRALVSET 240 AGANQNSSTA QPRAASPSKG AQGRPEWMQL PSHLSAASEV ARGRGVGVDG GTDFLDVGDG 300 RDGRKVWRDL WRDHRLRREE YITRGVERLH VGDRENENET DDPPAEADDD DDNDVECGEG 360 GGGHASPSLQ SDMAGKGGKS KPSGHNARPR AKKGQGKGSG GEGDGDAEEK RNFWSVEHII 420 ALIRAKRDQD AHMQGMGHAY AWMKPREWKW QDVAQRLNNV AVDRNAEKCG KKWDSLMQQF 480 KKVHHFQSPS GSADFFQLTL KERASRGFNF TMDRAVYDEI EGSTGMNHTI HPKNAADTGR 540 EDDEEGSTRG SSQTTGTPGG SGKRKSTRQQ TFEALTECME KHGELMASTM EIASKRQCSI 600 QVRQCEALEV EVEVQRKHYV ASDEEGAASH ETAQRVLAPV NRPRTPAAHV AGSSQAAVEG 660 GTLRSPVVAA RGGAVAVPGE VVEVLKEGDG AAVGEDNEAL VHRLRGQRAT THAMDAAAKF 720 WEDDNRFWND TQGSAIVRII QAARAYLVAV ARGVQPPAIR RSISLPHNSI PQHKIEDESE 780 LNAAKERALK VQTISLRAIH GWVFKSESRQ KGYHLAYQYA LNHTATDIAR AMWSAEDWRS 840 LLSPMLFRTT LDVDMKLPLW FVGVNIMDRH KDDECATYQE ACVQRLVRDF TSAVGTTEAM 900 DGGRVSYERL KRMAEAMRYL LTATMWIMLM AGDDPRSHYD AWVFVQLTAK TTLLASMNRQ 960 FDARRHITQS AQVMTDKLGR PPPTFAPPPV CIPDWASKCG VTFSHDATLA SPMEAKRLDW 1020 LGTGPPEDDD DDAESDDKGE GG

Sequence ? help Back to Top

Protein Sequence Length: 1042 aa Download sequence

MSQRSADTNI SGRTPAPNYA LTVGDRRRPR GFVAKSGRPF AALRSAAAIA APRCPVAAPR  60
GSLPRVHPWE RAATSTQKKV FDEGRQDGGT TGDPPVQWGA GRREAVRGEP VDRWQAPQRV  120
GYDALPPHLQ PLPGSSDEEE EVERRPQTVS LGSGSTQEWT ATELCGTGGD VYEQSFTELL  180
RPGLGEDEGD GHVNLSFGLS TGRSTTPSRT VLVRPHPGDE GGQLTVVDRS ARTRALVSET  240
AGANQNSSTA QPRAASPSKG AQGRPEWMQL PSHLSAASEV ARGRGVGVDG GTDFLDVGDG  300
RDGRKVWRDL WRDHRLRREE YITRGVERLH VGDRENENET DDPPAEADDD DDNDVECGEG  360
GGGHASPSLQ SDMAGKGGKS KPSGHNARPR AKKGQGKGSG GEGDGDAEEK RNFWSVEHII  420
ALIRAKRDQD AHMQGMGHAY AWMKPREWKW QDVAQRLNNV AVDRNAEKCG KKWDSLMQQF  480
KKVHHFQSPS GSADFFQLTL KERASRGFNF TMDRAVYDEI EGSTGMNHTI HPKNAADTGR  540
EDDEEGSTRG SSQTTGTPGG SGKRKSTRQQ TFEALTECME KHGELMASTM EIASKRQCSI  600
QVRQCEALEV EVEVQRKHYV ASDEEGAASH ETAQRVLAPV NRPRTPAAHV AGSSQAAVEG  660
GTLRSPVVAA RGGAVAVPGE VVEVLKEGDG AAVGEDNEAL VHRLRGQRAT THAMDAAAKF  720
WEDDNRFWND TQGSAIVRII QAARAYLVAV ARGVQPPAIR RSISLPHNSI PQHKIEDESE  780
LNAAKERALK VQTISLRAIH GWVFKSESRQ KGYHLAYQYA LNHTATDIAR AMWSAEDWRS  840
LLSPMLFRTT LDVDMKLPLW FVGVNIMDRH KDDECATYQE ACVQRLVRDF TSAVGTTEAM  900
DGGRVSYERL KRMAEAMRYL LTATMWIMLM AGDDPRSHYD AWVFVQLTAK TTLLASMNRQ  960
FDARRHITQS AQVMTDKLGR PPPTFAPPPV CIPDWASKCG VTFSHDATLA SPMEAKRLDW  1020
LGTGPPEDDD DDAESDDKGE GG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	387	395	ARPRAKKGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-06	Trihelix family protein