PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG70567.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C2H2

Protein Properties

Length: 745aa MW: 83722.8 Da PI: 6.4828

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG70567.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.8	4.9e-07	307	329	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg sF+ + +L +H+r+H GBG70567.1 307 YTCGMCGASFRKPAYLLNHQRKH 329 9*********************9 PP
2	zf-C2H2	19.6	2.5e-06	337	360	3	23
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 Cp C++s++r+++L+rH+r+ H GBG70567.1 337 CPieGCDRSYKRSDHLNRHLRScH 360 9999******************66 PP
3	zf-C2H2	15.1	6.5e-05	367	392	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp dC+ ++ +snL rHi++ H GBG70567.1 367 FSCPypDCKVTCAYRSNLIRHIKNqH 392 89*********************988 PP
4	zf-C2H2	11	0.0013	579	602	3	23
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C Cg+ F+++ +L H r+ H GBG70567.1 579 CAaeGCGMKFPDPRTLSEHCRNtH 602 77779****************988 PP
5	zf-C2H2	19.1	3.5e-06	633	658	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + C+ dC++sFs+ snL +Hir+ H GBG70567.1 633 HACTyeDCKRSFSNGSNLATHIRSyH 658 569999*****************999 PP
6	zf-C2H2	12.4	0.00048	665	683	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +Cp C+k+ +++ +L+rH+ GBG70567.1 665 VCPLCSKTLRDRRTLERHL 683 7*****************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence
MDYGLLPIDY GKGDKLYLTT ISKTTTSSKD VARDEDWHCK GNVVESGGAT EQEEEEEEEE 60 EEEEEKEEEE KEEEEKSVEL KKEKKEKNKK KKKKSENSRT VCEEAKDWKG MRSGKERKEK 120 KGRKLRGGGG EYALGGRVES QEEEEEEEEE EEEEGGGEER GYYVGGGEGG VGEGEEGGGE 180 EIGVVEEAGG GVGQKSSPSS ASPSSSPSCS SSSSFSYSSS SFRCSSSSSS SSSSSSASWM 240 PARTQRMERK PRMQRKESTE RKESKERKES KERGSCATDG QTTTRRRKSN CLSSGGTMIS 300 SAQKRYYTCG MCGASFRKPA YLLNHQRKHT GEKPFLCPIE GCDRSYKRSD HLNRHLRSCH 360 EYGESSFSCP YPDCKVTCAY RSNLIRHIKN QHPSSKGSPM EGGGGGGGGG GGGGGGGEEG 420 NGESNKQKRR RKEDEEVCNK RRGMSSSQRA QEEEEEEEEE EEEEVGRQGG GAEGMGEENM 480 LKRRRKAEET GMKRKRRRKD SISTENKQEL KEEEEEEEEE EEEEEEEEDD DDEVRRRVKD 540 YIMDRTGIVG GCLVLFPNPS RRRLHQLDTL AATYASCICA AEGCGMKFPD PRTLSEHCRN 600 THRHVKCSVC SIQITRAKYK AHLRTHNLDR PRHACTYEDC KRSFSNGSNL ATHIRSYHLR 660 TYEVVCPLCS KTLRDRRTLE RHLGAVHSSP RDAEKKEGRE RTRKEVPFDF IETLATGKTC 720 LQKADADSEP KKSKRTKKTK SKTRT

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence

MDYGLLPIDY GKGDKLYLTT ISKTTTSSKD VARDEDWHCK GNVVESGGAT EQEEEEEEEE  60
EEEEEKEEEE KEEEEKSVEL KKEKKEKNKK KKKKSENSRT VCEEAKDWKG MRSGKERKEK  120
KGRKLRGGGG EYALGGRVES QEEEEEEEEE EEEEGGGEER GYYVGGGEGG VGEGEEGGGE  180
EIGVVEEAGG GVGQKSSPSS ASPSSSPSCS SSSSFSYSSS SFRCSSSSSS SSSSSSASWM  240
PARTQRMERK PRMQRKESTE RKESKERKES KERGSCATDG QTTTRRRKSN CLSSGGTMIS  300
SAQKRYYTCG MCGASFRKPA YLLNHQRKHT GEKPFLCPIE GCDRSYKRSD HLNRHLRSCH  360
EYGESSFSCP YPDCKVTCAY RSNLIRHIKN QHPSSKGSPM EGGGGGGGGG GGGGGGGEEG  420
NGESNKQKRR RKEDEEVCNK RRGMSSSQRA QEEEEEEEEE EEEEVGRQGG GAEGMGEENM  480
LKRRRKAEET GMKRKRRRKD SISTENKQEL KEEEEEEEEE EEEEEEEEDD DDEVRRRVKD  540
YIMDRTGIVG GCLVLFPNPS RRRLHQLDTL AATYASCICA AEGCGMKFPD PRTLSEHCRN  600
THRHVKCSVC SIQITRAKYK AHLRTHNLDR PRHACTYEDC KRSFSNGSNL ATHIRSYHLR  660
TYEVVCPLCS KTLRDRRTLE RHLGAVHSSP RDAEKKEGRE RTRKEVPFDF IETLATGKTC  720
LQKADADSEP KKSKRTKKTK SKTRT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	124	KKEKKEKNKKKKKKSENSRTVCEEAKDWKGMRSGKERKEKKGRK
2	89	132	KKEKKEKNKKKKKKSENSRTVCEEAKDWKGMRSGKERKEKKGRK
3	90	133	KKEKKEKNKKKKKKSENSRTVCEEAKDWKGMRSGKERKEKKGRK
4	90	120	KKKKKSENSRTVCEEAKDWKGMRSGKERKEK
5	91	134	KKEKKEKNKKKKKKSENSRTVCEEAKDWKGMRSGKERKEKKGRK
6	91	121	KKKKKSENSRTVCEEAKDWKGMRSGKERKEK
7	284	289	TRRRKS
8	481	499	LKRRRKAEETGMKRKRRRK
9	482	499	KRRRKAEETGMKRKRRRK
10	483	500	KRRRKAEETGMKRKRRRK
11	484	501	KRRRKAEETGMKRKRRRK
12	493	498	KRKRRR
13	493	499	KRKRRRK
14	494	498	RKRRR
15	494	500	RKRRRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-15	C2H2 family protein