PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG70604.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1916aa MW: 214483 Da PI: 5.6898

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG70604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33.6	9.8e-11	1186	1260	2	69
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+ + aL++a+r +m++++ r k ++ +We+v ++++ g++r+ + C +kw+nl +++kk+ + ++ GBG70604.1 1186 WSVGDTTALVKAKRdqdlyiaSMGTSFARMKTREWKWEDVRARLQTMGVTREVVDCGKKWDNLMQQFKKVHKFQN 1260 899999******99999999*********************************************987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 1916 aa Download sequence
MANVAFRSGK VHALGDVVVL DVNTYDVLFG LPALVALRAN LDFERRSVIL RNTGGKPYVI 60 PMRLTLRTSV KRIREFEANG WIEPATGPWS FPVVLVPKKN GSVRICIDYR KLNDITIKDV 120 YPLPRIDDLL DVIGCANYFS KFDIRHGFHH ILMKEEDRPK TAFVLFEGTW QWVRCPMGIC 180 NAPATFQRAM NVTFQNFVNK TRLTQGMINF CVIVYMDDIL VYSDTFRGHA QHIEWTLGAL 240 RDAGFKIALE KSEFFLLEIS FFGDVVTRGG LRPDSRKVAA VKEAPVPTSL AQVRAFLGLA 300 SYYRRFIKGF TAIARPLKNL LRKEQPLHWD DECDQAFGAL KDALVTAPIL IRPDPSRQFI 360 LITDWQPEAI SGILAQKGND GKEHIIEYAS WTVPDERRND SAPQGECYAV VWGIQHFHPY 420 LYGQKFLLVT DHEPLLALKK LTNYTGMIGR WAVWLQEYEF DIVHRKTERH RNADGLTRLH 480 RPVHPGCRRL LTQELTVPIA QLADDLDVNI VSQVDPRLVP HVTSRTLSPY LQWSACVEGF 540 PSRIPPSRLD YLDPRDIVDP AFYRPPYMDE LEEIIREELA EESSKEEEES LNEDEGEPAQ 600 QQEGDEEELL QTESEEEAEE EDNEQGSGDD NDKEHADEDP QLEIAPVADL PISNDPTLDP 660 EPPQPDDGHV AQMAGPSARR PPSPPRCRRR SSSPSASLSL ATHEFGLKIA TRTVPWQDIC 720 DGITLEGRVA IQEEDAQMMA TVFSWRSDHL FSSAPPPDVA KQARMKQIDV RIWDQLFELH 780 VPQYVPDEIH RLILDILTEY QGAISVTDTD IGLSLVRRTG VEGDLLGFLF GSVRPNHRQP 840 ITQELTVPLA QLADDLPLEI VSQSDNSPVL HVLACTLTPY LRWSACLEAP GSSRNPPSQR 900 GYLDPHEIVD LAFFQDRTAS ENEEVEIEAE EESSEEEEEA EEEADEEETP KEGSYSEHSE 960 GEQSEEEKEE EEEEQDGEEE EEEDQEELEE SEWEGFEEEV RDEAWAQAQA QKREEIPAGK 1020 RQLEFASVAG HEMTILLNRF VKVVVIGMSR RRSSEEESVR VNVRSGCACH LRREADPALL 1080 LDASGRRICV REGLHQRGTE TITRGVQRLH VDEGDEAAVE EAQGCDDVDG DDDCNSDDLP 1140 DIRPLGRKVT NGGASVKKGP ATKTRRSKKM DDDTGRSDGE GGRNFWSVGD TTALVKAKRD 1200 QDLYIASMGT SFARMKTREW KWEDVRARLQ TMGVTREVVD CGKKWDNLMQ QFKKVHKFQN 1260 LSGGKDYFKL ASKARRSEGF NFVTDRSVYD EIEAMTKGDH TIHQKNLADT RAAGEVQMPA 1320 GAGAGGDTMA SEGGGEAADE GQGSTKDSTF SAGSGGGYRK RKNIQQQTFE AVVEVMDKHG 1380 ALMASTMDSA SKRQCSMMLR QCEILESEVE VQRKHYAAAD EANRMIGVEG SAGASRKVGV 1440 ATDEGRVHEG GLESCCHTYH CPRRRQAKNR GRGLSVCSML LMRLRLLQHK GRPLAASPAL 1500 KVGAHRAQRR HPCGTPYAFS RRRTAQRSRG RPFLRSPARL GLLQCRRRSS LWILSLSFSP 1560 RILLATDPYR PFGGPASFTR EDLLLEAEQC PQGSSPSRVR IDVELVCVAR AGPSLFVAAD 1620 LSRHAGVRRR LCRLLLAANQ SRRCRPSTSV HVDALLPRAA KALVRRRCEG RCSHRWPLTK 1680 AGNMFARGGA RGKKRENITA DTQGRERGRR HVPKAKRLRS EEASASLPLR RGRSWAAANE 1740 EEDNDVFTTE EEAAEDNVFA PRGSNLQRSS DQSCARRLLT PPPEAQQVHA HNTPKAKEVV 1800 VDVGGEDDEP LESRRQRNVI QGATATTVRI RGATEERPPQ GGLPSRRPSP VRATRLQRET 1860 PWNAGEGRGP ARSARGEWGA DRWCSHGVFG QCCCRGEGER GAPCCGAEGD ARLQQG

Sequence ? help Back to Top

Protein Sequence Length: 1916 aa Download sequence

MANVAFRSGK VHALGDVVVL DVNTYDVLFG LPALVALRAN LDFERRSVIL RNTGGKPYVI  60
PMRLTLRTSV KRIREFEANG WIEPATGPWS FPVVLVPKKN GSVRICIDYR KLNDITIKDV  120
YPLPRIDDLL DVIGCANYFS KFDIRHGFHH ILMKEEDRPK TAFVLFEGTW QWVRCPMGIC  180
NAPATFQRAM NVTFQNFVNK TRLTQGMINF CVIVYMDDIL VYSDTFRGHA QHIEWTLGAL  240
RDAGFKIALE KSEFFLLEIS FFGDVVTRGG LRPDSRKVAA VKEAPVPTSL AQVRAFLGLA  300
SYYRRFIKGF TAIARPLKNL LRKEQPLHWD DECDQAFGAL KDALVTAPIL IRPDPSRQFI  360
LITDWQPEAI SGILAQKGND GKEHIIEYAS WTVPDERRND SAPQGECYAV VWGIQHFHPY  420
LYGQKFLLVT DHEPLLALKK LTNYTGMIGR WAVWLQEYEF DIVHRKTERH RNADGLTRLH  480
RPVHPGCRRL LTQELTVPIA QLADDLDVNI VSQVDPRLVP HVTSRTLSPY LQWSACVEGF  540
PSRIPPSRLD YLDPRDIVDP AFYRPPYMDE LEEIIREELA EESSKEEEES LNEDEGEPAQ  600
QQEGDEEELL QTESEEEAEE EDNEQGSGDD NDKEHADEDP QLEIAPVADL PISNDPTLDP  660
EPPQPDDGHV AQMAGPSARR PPSPPRCRRR SSSPSASLSL ATHEFGLKIA TRTVPWQDIC  720
DGITLEGRVA IQEEDAQMMA TVFSWRSDHL FSSAPPPDVA KQARMKQIDV RIWDQLFELH  780
VPQYVPDEIH RLILDILTEY QGAISVTDTD IGLSLVRRTG VEGDLLGFLF GSVRPNHRQP  840
ITQELTVPLA QLADDLPLEI VSQSDNSPVL HVLACTLTPY LRWSACLEAP GSSRNPPSQR  900
GYLDPHEIVD LAFFQDRTAS ENEEVEIEAE EESSEEEEEA EEEADEEETP KEGSYSEHSE  960
GEQSEEEKEE EEEEQDGEEE EEEDQEELEE SEWEGFEEEV RDEAWAQAQA QKREEIPAGK  1020
RQLEFASVAG HEMTILLNRF VKVVVIGMSR RRSSEEESVR VNVRSGCACH LRREADPALL  1080
LDASGRRICV REGLHQRGTE TITRGVQRLH VDEGDEAAVE EAQGCDDVDG DDDCNSDDLP  1140
DIRPLGRKVT NGGASVKKGP ATKTRRSKKM DDDTGRSDGE GGRNFWSVGD TTALVKAKRD  1200
QDLYIASMGT SFARMKTREW KWEDVRARLQ TMGVTREVVD CGKKWDNLMQ QFKKVHKFQN  1260
LSGGKDYFKL ASKARRSEGF NFVTDRSVYD EIEAMTKGDH TIHQKNLADT RAAGEVQMPA  1320
GAGAGGDTMA SEGGGEAADE GQGSTKDSTF SAGSGGGYRK RKNIQQQTFE AVVEVMDKHG  1380
ALMASTMDSA SKRQCSMMLR QCEILESEVE VQRKHYAAAD EANRMIGVEG SAGASRKVGV  1440
ATDEGRVHEG GLESCCHTYH CPRRRQAKNR GRGLSVCSML LMRLRLLQHK GRPLAASPAL  1500
KVGAHRAQRR HPCGTPYAFS RRRTAQRSRG RPFLRSPARL GLLQCRRRSS LWILSLSFSP  1560
RILLATDPYR PFGGPASFTR EDLLLEAEQC PQGSSPSRVR IDVELVCVAR AGPSLFVAAD  1620
LSRHAGVRRR LCRLLLAANQ SRRCRPSTSV HVDALLPRAA KALVRRRCEG RCSHRWPLTK  1680
AGNMFARGGA RGKKRENITA DTQGRERGRR HVPKAKRLRS EEASASLPLR RGRSWAAANE  1740
EEDNDVFTTE EEAAEDNVFA PRGSNLQRSS DQSCARRLLT PPPEAQQVHA HNTPKAKEVV  1800
VDVGGEDDEP LESRRQRNVI QGATATTVRI RGATEERPPQ GGLPSRRPSP VRATRLQRET  1860
PWNAGEGRGP ARSARGEWGA DRWCSHGVFG QCCCRGEGER GAPCCGAEGD ARLQQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1522	1528	RRTAQRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-06	Trihelix family protein