PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG70699.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 564aa MW: 62200.6 Da PI: 5.7769

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG70699.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.4	2.9e-16	85	164	1	76
trihelix 1 rWtkqevlaLiearremeerlrrg......klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 rW+ +e+ aLi+ +r+ e +++g ++k+ +W ++ k+m+e g++r++++C+ +w+nl yk+i ++++++ +++ GBG70699.1 85 RWSSEETFALIACKRKQMELFGDGgpggriNAKERKWHDIQKRMAELGVQRTAVECTRRWDNLLSWYKRIVDNDRRE--DVK 164 8*******************974555556***************************************99984..333 PP

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence
MGSEFEVQEK DDDETTYPHD IDIPFPDVSK DAAEEQGMEM EGDEAGEGRV CILPETLTAE 60 DGRESPRKRN DERRAGRRRQ KLRERWSSEE TFALIACKRK QMELFGDGGP GGRINAKERK 120 WHDIQKRMAE LGVQRTAVEC TRRWDNLLSW YKRIVDNDRR EDVKSFWEMT PRQRRDHGLK 180 FAMERSVFDL IDSLKLERRA NLVRTISSAV NTTAAAPFAG ALDRVINPTA NALNGTPTGN 240 LAAPLLLSPS VTPALNLPIT RTLDPLGTPP TNPAVGGLLT PSLSPAINPP VTGALDPSAP 300 PTVNSMVIGT LDHSVARTIN LSLIRKPDPS ITPAITDPCT APAVEHTFSA AANQAHDRRV 360 NRTANLLDSG DRAEIFRDDT GHGQATDPNT IRSTDTDSQS PVIDANERRQ QMNAHGQPRV 420 RVQDAEDANP NLDNVAAAMM GSDNGEGMNE HTQHNQSEGH PDASQHTAQH TPPPFVPSRK 480 RKHVREVDFD EMLRAIETHT SKMVTSVGMS CNRSCETIMQ VGQMQCDALR EGLEVQRILA 540 MNVAEAGRLI SEALMVVAEK LSSR

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence

MGSEFEVQEK DDDETTYPHD IDIPFPDVSK DAAEEQGMEM EGDEAGEGRV CILPETLTAE  60
DGRESPRKRN DERRAGRRRQ KLRERWSSEE TFALIACKRK QMELFGDGGP GGRINAKERK  120
WHDIQKRMAE LGVQRTAVEC TRRWDNLLSW YKRIVDNDRR EDVKSFWEMT PRQRRDHGLK  180
FAMERSVFDL IDSLKLERRA NLVRTISSAV NTTAAAPFAG ALDRVINPTA NALNGTPTGN  240
LAAPLLLSPS VTPALNLPIT RTLDPLGTPP TNPAVGGLLT PSLSPAINPP VTGALDPSAP  300
PTVNSMVIGT LDHSVARTIN LSLIRKPDPS ITPAITDPCT APAVEHTFSA AANQAHDRRV  360
NRTANLLDSG DRAEIFRDDT GHGQATDPNT IRSTDTDSQS PVIDANERRQ QMNAHGQPRV  420
RVQDAEDANP NLDNVAAAMM GSDNGEGMNE HTQHNQSEGH PDASQHTAQH TPPPFVPSRK  480
RKHVREVDFD EMLRAIETHT SKMVTSVGMS CNRSCETIMQ VGQMQCDALR EGLEVQRILA  540
MNVAEAGRLI SEALMVVAEK LSSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-09	Trihelix family protein