PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG70702.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 529aa MW: 56682.7 Da PI: 6.8953

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG70702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.5	7.1e-13	80	164	1	76
trihelix 1 rWtkqevlaLiearr.emeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 rWt e+ aLi+ ++ +me++ +++ k+ +W ++ k++++ g+ r++++C+ +wenl yk+i ++e++ ++++ GBG70702.1 80 RWTLGETFALIACKQkQMETACEKDGggvggggrmnGKERKWHDIEKRLAAMGVGRTAVECTRRWENLFSWYKRIIDNEGR--PDVR 164 8**********99334555554324444455555***************************************9998..4444 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MGSEFAVQEN DEIELAVLQN AVADEGDVKA DGRAAGAGAG AGAGECQAHV GLEVSGCGSR 60 SSLHMAVVGT RNRREKMRER WTLGETFALI ACKQKQMETA CEKDGGGVGG GGRMNGKERK 120 WHDIEKRLAA MGVGRTAVEC TRRWENLFSW YKRIIDNEGR PDVRSFWEMT PRQRREAGLK 180 FAMDRSVFDL IDSMNLPSRS AGDPMIAAAS AATAAAAAAA INPTLPLPLP LPLPLPPPPV 240 NPTPTAISNP NTTPTNPNVH PTPNLTPTPT TSLPSVVTTL DPGASRVFDA YVDLAAAASV 300 RPALSPAVYP TSHSTLDSTG NLMPSSNHPS PWENDNSHGT VVNTVQDHDG VDFDGDPPIV 360 AANGHHRQMN MGMHNELRMG HQQQRIGNND GDRPAGAAMV TVGSNNDGHR RNQRAQHEQS 420 NSCPDASSHP PQQAPPSAGS RKRKSVHVHG EMDFKEVIQA IENHTAKMIA SMNASCNKTC 480 ETMIQVAQMQ CTVLREGVEV QRMLAMNVAE AGRLISDALM KVAEKLASR

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MGSEFAVQEN DEIELAVLQN AVADEGDVKA DGRAAGAGAG AGAGECQAHV GLEVSGCGSR  60
SSLHMAVVGT RNRREKMRER WTLGETFALI ACKQKQMETA CEKDGGGVGG GGRMNGKERK  120
WHDIEKRLAA MGVGRTAVEC TRRWENLFSW YKRIIDNEGR PDVRSFWEMT PRQRREAGLK  180
FAMDRSVFDL IDSMNLPSRS AGDPMIAAAS AATAAAAAAA INPTLPLPLP LPLPLPPPPV  240
NPTPTAISNP NTTPTNPNVH PTPNLTPTPT TSLPSVVTTL DPGASRVFDA YVDLAAAASV  300
RPALSPAVYP TSHSTLDSTG NLMPSSNHPS PWENDNSHGT VVNTVQDHDG VDFDGDPPIV  360
AANGHHRQMN MGMHNELRMG HQQQRIGNND GDRPAGAAMV TVGSNNDGHR RNQRAQHEQS  420
NSCPDASSHP PQQAPPSAGS RKRKSVHVHG EMDFKEVIQA IENHTAKMIA SMNASCNKTC  480
ETMIQVAQMQ CTVLREGVEV QRMLAMNVAE AGRLISDALM KVAEKLASR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	440	445	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-09	Trihelix family protein