PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG71018.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1473aa MW: 160490 Da PI: 6.3417

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG71018.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.2	6.8e-11	899	974	2	70
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ ++ aL+ a+r m++++ r k ++ +W++v + +++ g+ rs + C +kw+nl +++kk+ + +++ GBG71018.1 899 WSVDHMVALVSAKRdqdahleGMGHAFARMKPREWKWQDVHETLKKVGVARSGENCGKKWDNLMQQFKKVHRFMQE 974 999999******77777777777888999************************************9887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 1473 aa Download sequence
MVCMRTLLSR GGTVPGDVIN DWERGISAAR TMSHQAGGVP LVVPCSVPWV VCFHDAKAAK 60 LDLHTATWSL NALTDRIAGS CVLNDTRRRG CLARRERSIA AGGPTADAVW NPSEKDHTLA 120 EKSSCSCLHT TSDLAVNWNA DESRGNGSHS KSNQASESLA FSRTSVKDIM AVHLAAEEQL 180 SADSARGYSS EDGPEPSMQT TTVRDDSGEG HLQARQMEER GLQFWIGDAF YRAESALSRD 240 LSTLAAAVYR DKHGRLTVID AMAGCGVRAA RYLSQAGADF VWANDASIAN HLPLVQNLSR 300 CSQLEACNGS ARTLGSGPEV EWGMEAATEG VAPGGDSTWR VSHDDVVRVL SSRRSGPSRE 360 DINGAANVKD DHFDIVDIDS FGSDAWMFSS ALQAVRYGGM IYVTCTDGLT AGGHQPLTSL 420 ASYGAMVLRL PYANEIGIRM LIGGLVRQAA MWGLHAWPVF SHYSYHGPVF RAMMRIQKIK 480 GSHSWPSEWY AFIGYCHSCG ESRVVQWEDL GNVFCACRQD AGRPMQLTGP LWVGPLHTEE 540 DVREMESKAE SWGWITSGQT KEAGGSRSKG KSLDLRTLLE IMLEECQPGL SPYYTSLDLI 600 SRFGRIQTPR RDALVQALRQ EGYIAGRSHV ERSSVKTNAP MAECIRNCGH VLITVVVVVM 660 CRSARGVPAM VPDEEDAHAD VNLLFGLCSG SSTAMTRKLI INPHPDGDWG DAALVGRSGG 720 GSSIGSPATK KTRDRHCLQS KSAPATRPEV VRSQRMQLPS PLSGGQVSGR RSGGGGVDAR 780 FAVDVDERTG RRVWAEHRQQ LRGDREDAIT RGVRQLHVGG SDTDKEAAVE VDDFEDMDEE 840 DEDNEEAAVD IRPVGRTSMG GWGRSKKAYA AHGRQTKKTA SGGSDGEGDI DVDSGRNFWS 900 VDHMVALVSA KRDQDAHLEG MGHAFARMKP REWKWQDVHE TLKKVGVARS GENCGKKWDN 960 LMQQFKKVHR FMQESGKPDY FQLTGKERRS HGFNFVMERA VYEEIKGSTT KNHTIHERNV 1020 ADTGAPGGVE MSSGSWGGRG DGGGVGDVGG EPQEEEDGST KVKETESSTS LTPRRQAVQD 1080 EAVSGAFQRA VGSCGTGGAG GVVAAAGAGG AVLTRAAGGA AHAVNNTDDE DEEPLANRVW 1140 RGNGPIVLAE QTRLWVDDNR FWNDTEDNRM YKIVNGTRNY LVSVVRGVNP LSRSVVLPHS 1200 SIAQGTITDE SQLREATERA AKVQRVVMRV IHGWIFKSTS RSQGYTAAYG YLLQHVATDI 1260 TRAMWCAEEW SVCVSSVVCH VTLELGMQVP LWFVSTHIED RPEDDELAIY QEETLQRLVA 1320 GFTSAVVVAE LQDGGRLSHD RLKNVAEGMK VFVVVVMWLM RMSGHDLRSH YAASFFVQLA 1380 AKPTLLASMH CSFDARRHIT QAANVVTERL CKPPMVLADS PHYILDWASC GVKFGHDANL 1440 PSPDDAKRLD WLGTGPLEEE DDDDGEQQKV GGR

Sequence ? help Back to Top

Protein Sequence Length: 1473 aa Download sequence

MVCMRTLLSR GGTVPGDVIN DWERGISAAR TMSHQAGGVP LVVPCSVPWV VCFHDAKAAK  60
LDLHTATWSL NALTDRIAGS CVLNDTRRRG CLARRERSIA AGGPTADAVW NPSEKDHTLA  120
EKSSCSCLHT TSDLAVNWNA DESRGNGSHS KSNQASESLA FSRTSVKDIM AVHLAAEEQL  180
SADSARGYSS EDGPEPSMQT TTVRDDSGEG HLQARQMEER GLQFWIGDAF YRAESALSRD  240
LSTLAAAVYR DKHGRLTVID AMAGCGVRAA RYLSQAGADF VWANDASIAN HLPLVQNLSR  300
CSQLEACNGS ARTLGSGPEV EWGMEAATEG VAPGGDSTWR VSHDDVVRVL SSRRSGPSRE  360
DINGAANVKD DHFDIVDIDS FGSDAWMFSS ALQAVRYGGM IYVTCTDGLT AGGHQPLTSL  420
ASYGAMVLRL PYANEIGIRM LIGGLVRQAA MWGLHAWPVF SHYSYHGPVF RAMMRIQKIK  480
GSHSWPSEWY AFIGYCHSCG ESRVVQWEDL GNVFCACRQD AGRPMQLTGP LWVGPLHTEE  540
DVREMESKAE SWGWITSGQT KEAGGSRSKG KSLDLRTLLE IMLEECQPGL SPYYTSLDLI  600
SRFGRIQTPR RDALVQALRQ EGYIAGRSHV ERSSVKTNAP MAECIRNCGH VLITVVVVVM  660
CRSARGVPAM VPDEEDAHAD VNLLFGLCSG SSTAMTRKLI INPHPDGDWG DAALVGRSGG  720
GSSIGSPATK KTRDRHCLQS KSAPATRPEV VRSQRMQLPS PLSGGQVSGR RSGGGGVDAR  780
FAVDVDERTG RRVWAEHRQQ LRGDREDAIT RGVRQLHVGG SDTDKEAAVE VDDFEDMDEE  840
DEDNEEAAVD IRPVGRTSMG GWGRSKKAYA AHGRQTKKTA SGGSDGEGDI DVDSGRNFWS  900
VDHMVALVSA KRDQDAHLEG MGHAFARMKP REWKWQDVHE TLKKVGVARS GENCGKKWDN  960
LMQQFKKVHR FMQESGKPDY FQLTGKERRS HGFNFVMERA VYEEIKGSTT KNHTIHERNV  1020
ADTGAPGGVE MSSGSWGGRG DGGGVGDVGG EPQEEEDGST KVKETESSTS LTPRRQAVQD  1080
EAVSGAFQRA VGSCGTGGAG GVVAAAGAGG AVLTRAAGGA AHAVNNTDDE DEEPLANRVW  1140
RGNGPIVLAE QTRLWVDDNR FWNDTEDNRM YKIVNGTRNY LVSVVRGVNP LSRSVVLPHS  1200
SIAQGTITDE SQLREATERA AKVQRVVMRV IHGWIFKSTS RSQGYTAAYG YLLQHVATDI  1260
TRAMWCAEEW SVCVSSVVCH VTLELGMQVP LWFVSTHIED RPEDDELAIY QEETLQRLVA  1320
GFTSAVVVAE LQDGGRLSHD RLKNVAEGMK VFVVVVMWLM RMSGHDLRSH YAASFFVQLA  1380
AKPTLLASMH CSFDARRHIT QAANVVTERL CKPPMVLADS PHYILDWASC GVKFGHDANL  1440
PSPDDAKRLD WLGTGPLEEE DDDDGEQQKV GGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1037	1044	GGRGDGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-07	Trihelix family protein