PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG71436.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 865aa MW: 91735.8 Da PI: 5.3383

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG71436.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.7	1.7e-09	79	151	2	67
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 W+ + +L++ +r ++++++r + k+ +W++++k+m g + + C +kwenl + ykki++ GBG71436.1 79 WSLEDQVLLVRCKReqemhlaGLGHNYGRMRTKEWKWDDIAKRMTNAGRPKDADDCMKKWENLFQHYKKIQRF 151 5555556666666622222223345555788**************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 865 aa Download sequence
MQAHSDGGDD YGGGGDDADE GFREDVEARD DDEDIPIWPL GKTGGRGKGR SRGVVRGRSV 60 GCGGRRGVND DGGKSATYWS LEDQVLLVRC KREQEMHLAG LGHNYGRMRT KEWKWDDIAK 120 RMTNAGRPKD ADDCMKKWEN LFQHYKKIQR FKNVSGQADF FRLSNEERKE HNFKFRMERV 180 LYNETHAGML GNHTIFPPNV ADTGSPDVVQ LPRRGAVGGE SVSNMEEEEE EGRRRRKEDG 240 EEEEEEERRR GGGGGGKKTK GGGGGGGGGK KTKGGGGGGG GGGGSEEEEK MKKKGGGRGG 300 EKKKMKAGGG GGGGGPAGVE IGTRRRRKKK KMKGGGGGGD NKKANGGGGG DNKKANGGGG 360 GGGAAGDEVG TFGQAADNDI DAIMPTVRVP DCEGVNHGEE FLLVGGVIHL RGEELLACEG 420 DGVFARWSLG DREDLAKVLK VGLEGGAEDK DVIKVDDDAD FEEVAEDVVH GRLEGGGGID 480 ESEWHYEELV VPEPRAEGGF VGVLLADTDL VEATAKVDLG EVLGSTETIK ELGNARPALQ 540 THASVMKLPV APMSRRARNL VVDAPRVAVM NLRWKRDELA VKMMVLRRRC SLPKRTSRSC 600 RACSSTTSEK VTVDGFGRRL EEHGARGGVC DAWESSGEGG VTGGGEVEEL SMPDRCPGDC 660 VHDEGPVLVK GGDAEVVGRV EAEWRVWFEE VMEVVSSGVV WWKSGCGRGR ARSGGGVESI 720 VVKHAREEVS KGHVGFVGEG GCKVFVAYSF DAGDERKVGN DGVGEVVAQG ADVVDEAVRE 780 TGLAEVAELF KVVVNGFLGA EGGSEKVGPL EEGVTWSSGG STVFDFSHPP FGYIAKEAGG 840 GNGEPVGTGH VVEVKRVQED RPRGQ

Sequence ? help Back to Top

Protein Sequence Length: 865 aa Download sequence

MQAHSDGGDD YGGGGDDADE GFREDVEARD DDEDIPIWPL GKTGGRGKGR SRGVVRGRSV  60
GCGGRRGVND DGGKSATYWS LEDQVLLVRC KREQEMHLAG LGHNYGRMRT KEWKWDDIAK  120
RMTNAGRPKD ADDCMKKWEN LFQHYKKIQR FKNVSGQADF FRLSNEERKE HNFKFRMERV  180
LYNETHAGML GNHTIFPPNV ADTGSPDVVQ LPRRGAVGGE SVSNMEEEEE EGRRRRKEDG  240
EEEEEEERRR GGGGGGKKTK GGGGGGGGGK KTKGGGGGGG GGGGSEEEEK MKKKGGGRGG  300
EKKKMKAGGG GGGGGPAGVE IGTRRRRKKK KMKGGGGGGD NKKANGGGGG DNKKANGGGG  360
GGGAAGDEVG TFGQAADNDI DAIMPTVRVP DCEGVNHGEE FLLVGGVIHL RGEELLACEG  420
DGVFARWSLG DREDLAKVLK VGLEGGAEDK DVIKVDDDAD FEEVAEDVVH GRLEGGGGID  480
ESEWHYEELV VPEPRAEGGF VGVLLADTDL VEATAKVDLG EVLGSTETIK ELGNARPALQ  540
THASVMKLPV APMSRRARNL VVDAPRVAVM NLRWKRDELA VKMMVLRRRC SLPKRTSRSC  600
RACSSTTSEK VTVDGFGRRL EEHGARGGVC DAWESSGEGG VTGGGEVEEL SMPDRCPGDC  660
VHDEGPVLVK GGDAEVVGRV EAEWRVWFEE VMEVVSSGVV WWKSGCGRGR ARSGGGVESI  720
VVKHAREEVS KGHVGFVGEG GCKVFVAYSF DAGDERKVGN DGVGEVVAQG ADVVDEAVRE  780
TGLAEVAELF KVVVNGFLGA EGGSEKVGPL EEGVTWSSGG STVFDFSHPP FGYIAKEAGG  840
GNGEPVGTGH VVEVKRVQED RPRGQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	238	RRRRKE
2	233	260	RRRRKEDGEEEEEEERRRGGGGGGKKTK
3	233	273	RRRRKEDGEEEEEEERRRGGGGGGKKTKGGGGGGGGGKKTK
4	234	261	RRRRKEDGEEEEEEERRRGGGGGGKKTK
5	234	274	RRRRKEDGEEEEEEERRRGGGGGGKKTKGGGGGGGGGKKTK
6	253	263	GGGGKKTKGGG
7	254	264	GGGGKKTKGGG
8	255	265	GGGGKKTKGGG
9	260	270	KGGGGGGGGGK
10	266	276	GGGGKKTKGGG
11	267	277	GGGGKKTKGGG
12	268	278	GGGGKKTKGGG
13	324	330	RRRRKKK
14	325	331	RRRKKKK
15	325	331	RRRRKKK
16	326	332	RRRKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-06	Trihelix family protein