PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG71629.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 488aa MW: 52602 Da PI: 8.7519

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG71629.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.3	6.1e-09	1	17	10	26
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 ++tGtC yGdrC+F H+ GBG71629.1 1 MKTGTCAYGDRCRFYHP 17 89**************8 PP
2	zf-CCCH	39.9	7e-13	51	77	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Crf+ +tGtCk+G++CkF H++ GBG71629.1 51 PGQPICRFYVKTGTCKFGASCKFDHPR 77 5789*********************96 PP
3	zf-CCCH	29.1	1.7e-09	129	154	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++rt +C+yG +Ck++H+p GBG71629.1 129 GEKECAYYMRTRECRYGQTCKYHHPP 154 7899********************97 PP
4	zf-CCCH	35.2	2e-11	386	412	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG C+yG +C+F+H++ GBG71629.1 386 PGQPECNYYMRTGDCRYGMTCRFHHPK 412 5789*********************96 PP
5	zf-CCCH	30.8	4.9e-10	434	460	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ r+G Ck+G +CkF+H++ GBG71629.1 434 PGQPVCNYYNRNGLCKFGHTCKFNHPM 460 5789*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MKTGTCAYGD RCRFYHPSAN ATTGTGTARG ANLQVPSPVG RAKAAEHPER PGQPICRFYV 60 KTGTCKFGAS CKFDHPRGNT PVVGNPLVPT APQAQQPQQQ QQQQQQQQQQ QQQQRGPVLN 120 ELGYPIRPGE KECAYYMRTR ECRYGQTCKY HHPPSFPAPG PNPVYPGLPI APAPGPFLPV 180 HDPAMQHAWH VRGPYRFPFV GPHPVTTGQI PLFFQPQTPA SGLIYPPPVS WFNPYLQTAA 240 SHPPMIFPQP QSTGNPSQQQ QQQQQQQHTA SSAGGTFFYA QAPVSGTAPA TDQQTQLTQV 300 TSGAGTPAAV RLGTAAAAAY VPPPSGGHSD TTSSLPCESV PSGATALGHC SVPGSQVSGG 360 ACVMLSSPKD QQQQQQQQQN LFPERPGQPE CNYYMRTGDC RYGMTCRFHH PKDRAAPKNV 420 AQCSLSPMGL PLRPGQPVCN YYNRNGLCKF GHTCKFNHPM GGDLDYDPSA SSLVDMPVAP 480 ISPSANQS

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MKTGTCAYGD RCRFYHPSAN ATTGTGTARG ANLQVPSPVG RAKAAEHPER PGQPICRFYV  60
KTGTCKFGAS CKFDHPRGNT PVVGNPLVPT APQAQQPQQQ QQQQQQQQQQ QQQQRGPVLN  120
ELGYPIRPGE KECAYYMRTR ECRYGQTCKY HHPPSFPAPG PNPVYPGLPI APAPGPFLPV  180
HDPAMQHAWH VRGPYRFPFV GPHPVTTGQI PLFFQPQTPA SGLIYPPPVS WFNPYLQTAA  240
SHPPMIFPQP QSTGNPSQQQ QQQQQQQHTA SSAGGTFFYA QAPVSGTAPA TDQQTQLTQV  300
TSGAGTPAAV RLGTAAAAAY VPPPSGGHSD TTSSLPCESV PSGATALGHC SVPGSQVSGG  360
ACVMLSSPKD QQQQQQQQQN LFPERPGQPE CNYYMRTGDC RYGMTCRFHH PKDRAAPKNV  420
AQCSLSPMGL PLRPGQPVCN YYNRNGLCKF GHTCKFNHPM GGDLDYDPSA SSLVDMPVAP  480
ISPSANQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	8e-39	C3H family protein