PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG71984.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 861aa MW: 93883.1 Da PI: 7.9726

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG71984.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.8	1e-11	147	221	2	69
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+ + + aLi+a+r+ + +l+ r k ++ +W +v ++++ g+ r++ +C +kw+nl +++kk+ + ++ GBG71984.1 147 WSVDDIIALIRAKRDQDAHLQgmghayaRMKPREWKWLDVVTRLKKVGVDREADRCGKKWDNLMQQFKKVHHFQG 221 99**********777776643333336789999999*****************************988666 PP

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence
MQSPSPLSAG SSAGRRLGEC RETARGVADV GDAHDGREVW AEQRRLMRSG RKESITRGVQ 60 RLHVGEDGHD GEEAVGDAHD PDWNDNGAEG GEDNAGYISP SKQAAAMGGR GGKKKLCAGN 120 GRRGERTAGK GTDAEVDVDG EGGRHFWSVD DIIALIRAKR DQDAHLQGMG HAYARMKPRE 180 WKWLDVVTRL KKVGVDREAD RCGKKWDNLM QQFKKVHHFQ GLSGKKDFFQ LSGKDRMSKG 240 FNFNMDRAVY DEILGTTAKN HTINPKNVAD TGAQGGVRLP SASSADPESV GDGDGGAEHD 300 DDGDGSTKAS TSFRPSSSPP SSHFRRLSPS SLGLSSSPRT SSNTSPRLPS QLAVGFDSAG 360 HVIEAKRANK VVVGVSCAMS SRGSGRGKAA VNLAQQPPTR EKKGRHMASK KRKILQGAPT 420 HGGYVVDEEW VPEDVATQEG TKFENSDDMP LQRKSSRWGS GGLRIDDAGD RRLAGGRAVP 480 EDVLDVDATM AARKGGGNRA PLPRVKAGNV RGEGDDDEAS VNRVRQRNTR EGMEAAAKLW 540 VDDLRFWNER EGFAIVKLIV EARGYLVAVA RGEQPPPIHR SIVLPHNNIP QQKIADESEF 600 NAAKERAVKV QGIALRVIHG WVFKSQNRQR GYHAAYQYAL NHVATDIARA MWLGEDWRYC 660 VSPMVIHHTL DMDMKLPLWF VGGDVEDRHE DDDLAAYQEA SIQRLVGAFT SAVIIAEATN 720 GGRVSHERLK TMADAMRMML KVAMWLMRMA GDDHRAHYGA WVFVQLTMKS TLVASMHCCF 780 DARRHIVQAA TVITDKLASP PITLIDPPMY VPDWASIGVK FSHDATLSSS MEAKKVDWLG 840 TGPPEDEDDG KGDEEGSGGG R

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence

MQSPSPLSAG SSAGRRLGEC RETARGVADV GDAHDGREVW AEQRRLMRSG RKESITRGVQ  60
RLHVGEDGHD GEEAVGDAHD PDWNDNGAEG GEDNAGYISP SKQAAAMGGR GGKKKLCAGN  120
GRRGERTAGK GTDAEVDVDG EGGRHFWSVD DIIALIRAKR DQDAHLQGMG HAYARMKPRE  180
WKWLDVVTRL KKVGVDREAD RCGKKWDNLM QQFKKVHHFQ GLSGKKDFFQ LSGKDRMSKG  240
FNFNMDRAVY DEILGTTAKN HTINPKNVAD TGAQGGVRLP SASSADPESV GDGDGGAEHD  300
DDGDGSTKAS TSFRPSSSPP SSHFRRLSPS SLGLSSSPRT SSNTSPRLPS QLAVGFDSAG  360
HVIEAKRANK VVVGVSCAMS SRGSGRGKAA VNLAQQPPTR EKKGRHMASK KRKILQGAPT  420
HGGYVVDEEW VPEDVATQEG TKFENSDDMP LQRKSSRWGS GGLRIDDAGD RRLAGGRAVP  480
EDVLDVDATM AARKGGGNRA PLPRVKAGNV RGEGDDDEAS VNRVRQRNTR EGMEAAAKLW  540
VDDLRFWNER EGFAIVKLIV EARGYLVAVA RGEQPPPIHR SIVLPHNNIP QQKIADESEF  600
NAAKERAVKV QGIALRVIHG WVFKSQNRQR GYHAAYQYAL NHVATDIARA MWLGEDWRYC  660
VSPMVIHHTL DMDMKLPLWF VGGDVEDRHE DDDLAAYQEA SIQRLVGAFT SAVIIAEATN  720
GGRVSHERLK TMADAMRMML KVAMWLMRMA GDDHRAHYGA WVFVQLTMKS TLVASMHCCF  780
DARRHIVQAA TVITDKLASP PITLIDPPMY VPDWASIGVK FSHDATLSSS MEAKKVDWLG  840
TGPPEDEDDG KGDEEGSGGG R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-08	Trihelix family protein