PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG72354.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 606aa MW: 64886.4 Da PI: 9.0119

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG72354.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.7	3.9e-10	354	428	2	70
trihelix 2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ +e l+L ++ e++ + +++ + ++We+v++++ + g++r+++ Ck+kw ++ k+ ++i++ ++ GBG72354.1 354 WSLEERLDLAKFAGEDGALMADAEgaqacmTRSKRWERVARRLGDIGYSRTAEDCKKKWAEMVKKVREIRDACEG 428 777777777777777777777654555556899********************************9999987554 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MNVVHHLHCR TVPWPSVGRR VHGLAGDFMR RGFVADVQPL WGRGRCVGVP LPKSISSIRR 60 ALSTHVPSLG AVEVGSVVRA VRPNIRSVVG RSFLPEANDI THAVERCGGR GRIVEKGLRD 120 RNVAVAGTVY ARPNAAHRPL STGTTAAQDC VVGDGRACPC RCLRDSTVTM VIVIDVSDRE 180 RGGVGSCMFL WGFRRNCLRW GGGGXGGGGV LQGASPAIDM LSVVGAAQAS RNSEVHQRRM 240 PVDVQASGVD SSSPDLFCAT DSRGYRQWHE EGRSDARTMF PGNTAGETGE VVVEGTGMGN 300 RGERAEKDDD DGTTSMAPDK IDEGVGNRTK PRPAGGRKRK GGSSPRPPKK NNPWSLEERL 360 DLAKFAGEDG ALMADAEGAQ ACMTRSKRWE RVARRLGDIG YSRTAEDCKK KWAEMVKKVR 420 EIRDACEGSG KQAYWDTTTE QRRKLGVSLT FERQLWDAME WYRLKKSVTC DDTLASEDLR 480 GGGSPSDGEA GSEGGXTDAS DTATKTRRTS SRKARGGDSP MSMYGMASMM EESMMALCEG 540 LDKAASTLAH GSTNGSRMVA TENGAVAGAM RQGNAVLEML VGVMAARGAG SGRGEDSSHD 600 TDPSTR

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MNVVHHLHCR TVPWPSVGRR VHGLAGDFMR RGFVADVQPL WGRGRCVGVP LPKSISSIRR  60
ALSTHVPSLG AVEVGSVVRA VRPNIRSVVG RSFLPEANDI THAVERCGGR GRIVEKGLRD  120
RNVAVAGTVY ARPNAAHRPL STGTTAAQDC VVGDGRACPC RCLRDSTVTM VIVIDVSDRE  180
RGGVGSCMFL WGFRRNCLRW GGGGXGGGGV LQGASPAIDM LSVVGAAQAS RNSEVHQRRM  240
PVDVQASGVD SSSPDLFCAT DSRGYRQWHE EGRSDARTMF PGNTAGETGE VVVEGTGMGN  300
RGERAEKDDD DGTTSMAPDK IDEGVGNRTK PRPAGGRKRK GGSSPRPPKK NNPWSLEERL  360
DLAKFAGEDG ALMADAEGAQ ACMTRSKRWE RVARRLGDIG YSRTAEDCKK KWAEMVKKVR  420
EIRDACEGSG KQAYWDTTTE QRRKLGVSLT FERQLWDAME WYRLKKSVTC DDTLASEDLR  480
GGGSPSDGEA GSEGGXTDAS DTATKTRRTS SRKARGGDSP MSMYGMASMM EESMMALCEG  540
LDKAASTLAH GSTNGSRMVA TENGAVAGAM RQGNAVLEML VGVMAARGAG SGRGEDSSHD  600
TDPSTR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	332	340	RPAGGRKRK