PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG72622.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1617aa MW: 176242 Da PI: 8.4949

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG72622.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.4	1.8e-13	204	278	2	69
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+ +++laLi+a+r+ + ++ r k + +W +v++++++ g+ r + +C++kw+nl +++kk+ + ++ GBG72622.1 204 WSVDHILALIRAKRDQDAHMHgmghayaRIKPRDWKWLDVAQRLKKVGIDRDADKCRKKWDNLMQQFKKVHHFNR 278 ************666666632222215578999999*****************************998877 PP

Sequence ? help Back to Top
Protein Sequence Length: 1617 aa Download sequence
MVIVCPHLDD DGGQVTAVMR SSKSPTPVRE ASGNNRNPPR QQFRSPSVSR GASARPQWMQ 60 SPSPLSAGLS AACRRGECGE TNSGFDDIGD ELDGREVWAE HRRELRSGCE ESITRGVQRL 120 CGGEHEKEKE APVLDADDHD DDDNGGEGGE EDEGYVLRFR QNNMGGRGGK TKASARNDRR 180 GKKAVGKGSD VDGDGDAEGG RHFWSVDHIL ALIRAKRDQD AHMHGMGHAY ARIKPRDWKW 240 LDVAQRLKKV GIDRDADKCR KKWDNLMQQF KKVHHFNRLF GKHDFFQLSA KKWMSKGFNF 300 NMDRAVYDKI LGSTAKNHTI HPKNVADTGA LRGADDVIDV EAAAASREDV PGGVVQPRRA 360 TVPHVNDGPD AHESALRART PATPRPWTGV DVGGTSQVVA QGNRNRSPAQ EAHVAVVGGA 420 SHAGDAVRAG DVGGEGEDDE ALVNRVRRLN TWDGMEAAAK LWVDDLRFWN ETKGNAIVKL 480 IQEARLHLVA VAQGVQPPPV RQSIVLPHSS IPQHKIKDET KLIAAKERAL KVQTIGLRVS 540 RFRCNRRRSG GVLLLHFVGR CVQRSNISKC VLCAGCDVVA GRPVCCHSRA RVRVVRSGGH 600 LHVVCFMADI FRRLPLLLLA SLLLLLLVFL RAFVVTXPPX RRXRRZVDRK TTMDRRDSSV 660 GQQRRVMDFS IPDRPRSGHR PAAYDPSLYS HLPPHEQPLP XDPEDXWVED LSHTLPLGSG 720 STQEWTSRQC QQXEAXTXRE SFTALLEEGV DNAATELVDL DFGLCSGSGA SGPIHGGGVV 780 GSPTLGGGSS RVGEPTNGCR PPVPSSMGAG PLGESSRAVT PIRPSVSSPT MRQRATASAA 840 INDGTPPEDI GRQAWENCRL QMRRAAMENI TTGVSRLRVG SDVDADNSRR ASGDESPDSR 900 YEEDAEDGEG LEIRPGVGAA GPAEAAGGGR RDNVFQQYKK VQRYQNMSGG KNFLTLTPAT 960 RADEGFNFRM DERVFNEIDN MSKNNKTIYP DNVADTSARG GVPPAMDGHR QAVVGGESSA 1020 GGEGGDGIDE DVGSALETGF SAGSTGTPAK RKNMRQQTFD AIAEVMDKHG SLMADTVEGA 1080 SKRQCSILER QCDILDREVE AQKRQCDILE RHYTASDEAN KMMCTTFEWR HVASRRRNVH 1140 TASAGQIGRG HIPKSKKLLE GDGSEGEMGG DGGEEETPMD ITSKGTPVLG FGRDGMSRQR 1200 MLALTNLGVP TSTRGGGGGM ARAQGVSSGD IPPQRAVGSA STISSMFERG EKAPVGESPS 1260 RHVEASNPTI VVASPRDVLQ SAQAASAAGH AAAVGVGERR EDRRVEEAGR KQERREETPR 1320 GEXEDDQPLS ARKKRSRQEE ELEAKSKLWV DGKAFWATGP GPMIADAVHS CADYFCAINV 1380 TRRCRRGDNA STISMNTLGV ILNFSLWYSS EASSIFRRSS HVPPVLLRIH HLGVARGIAP 1440 DDMAAQNWVM DSDMDTQSGA AITWWRSSRC LQIDTLVLNR VVVFSMRQRM ATADTAATTA 1500 FLSTLLKVLP RTSCDTCSIT MPQRRLVQQP QQTEDWTLVT HCPSGRWSGP SYTNGGRVKI 1560 WRATGSSSSA GRRRRDTHHF TRSNVVTFRA APADDRMNES PTAMGAANHP RTRFAHW

Sequence ? help Back to Top

Protein Sequence Length: 1617 aa Download sequence

MVIVCPHLDD DGGQVTAVMR SSKSPTPVRE ASGNNRNPPR QQFRSPSVSR GASARPQWMQ  60
SPSPLSAGLS AACRRGECGE TNSGFDDIGD ELDGREVWAE HRRELRSGCE ESITRGVQRL  120
CGGEHEKEKE APVLDADDHD DDDNGGEGGE EDEGYVLRFR QNNMGGRGGK TKASARNDRR  180
GKKAVGKGSD VDGDGDAEGG RHFWSVDHIL ALIRAKRDQD AHMHGMGHAY ARIKPRDWKW  240
LDVAQRLKKV GIDRDADKCR KKWDNLMQQF KKVHHFNRLF GKHDFFQLSA KKWMSKGFNF  300
NMDRAVYDKI LGSTAKNHTI HPKNVADTGA LRGADDVIDV EAAAASREDV PGGVVQPRRA  360
TVPHVNDGPD AHESALRART PATPRPWTGV DVGGTSQVVA QGNRNRSPAQ EAHVAVVGGA  420
SHAGDAVRAG DVGGEGEDDE ALVNRVRRLN TWDGMEAAAK LWVDDLRFWN ETKGNAIVKL  480
IQEARLHLVA VAQGVQPPPV RQSIVLPHSS IPQHKIKDET KLIAAKERAL KVQTIGLRVS  540
RFRCNRRRSG GVLLLHFVGR CVQRSNISKC VLCAGCDVVA GRPVCCHSRA RVRVVRSGGH  600
LHVVCFMADI FRRLPLLLLA SLLLLLLVFL RAFVVTXPPX RRXRRZVDRK TTMDRRDSSV  660
GQQRRVMDFS IPDRPRSGHR PAAYDPSLYS HLPPHEQPLP XDPEDXWVED LSHTLPLGSG  720
STQEWTSRQC QQXEAXTXRE SFTALLEEGV DNAATELVDL DFGLCSGSGA SGPIHGGGVV  780
GSPTLGGGSS RVGEPTNGCR PPVPSSMGAG PLGESSRAVT PIRPSVSSPT MRQRATASAA  840
INDGTPPEDI GRQAWENCRL QMRRAAMENI TTGVSRLRVG SDVDADNSRR ASGDESPDSR  900
YEEDAEDGEG LEIRPGVGAA GPAEAAGGGR RDNVFQQYKK VQRYQNMSGG KNFLTLTPAT  960
RADEGFNFRM DERVFNEIDN MSKNNKTIYP DNVADTSARG GVPPAMDGHR QAVVGGESSA  1020
GGEGGDGIDE DVGSALETGF SAGSTGTPAK RKNMRQQTFD AIAEVMDKHG SLMADTVEGA  1080
SKRQCSILER QCDILDREVE AQKRQCDILE RHYTASDEAN KMMCTTFEWR HVASRRRNVH  1140
TASAGQIGRG HIPKSKKLLE GDGSEGEMGG DGGEEETPMD ITSKGTPVLG FGRDGMSRQR  1200
MLALTNLGVP TSTRGGGGGM ARAQGVSSGD IPPQRAVGSA STISSMFERG EKAPVGESPS  1260
RHVEASNPTI VVASPRDVLQ SAQAASAAGH AAAVGVGERR EDRRVEEAGR KQERREETPR  1320
GEXEDDQPLS ARKKRSRQEE ELEAKSKLWV DGKAFWATGP GPMIADAVHS CADYFCAINV  1380
TRRCRRGDNA STISMNTLGV ILNFSLWYSS EASSIFRRSS HVPPVLLRIH HLGVARGIAP  1440
DDMAAQNWVM DSDMDTQSGA AITWWRSSRC LQIDTLVLNR VVVFSMRQRM ATADTAATTA  1500
FLSTLLKVLP RTSCDTCSIT MPQRRLVQQP QQTEDWTLVT HCPSGRWSGP SYTNGGRVKI  1560
WRATGSSSSA GRRRRDTHHF TRSNVVTFRA APADDRMNES PTAMGAANHP RTRFAHW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	7e-08	Trihelix family protein