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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | GBG73990.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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| Family | HB-other | ||||||||
| Protein Properties | Length: 5554aa MW: 590189 Da PI: 5.4577 | ||||||||
| Description | HB-other family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 53 | 6e-17 | 3165 | 3216 | 6 | 57 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
t+ q e+Le+++++++yp+ + r+eLA++lgL+e+q ++WF rR k++k
GBG73990.1 3165 MKTPAQKEVLERYYAEDKYPTDTVRAELATQLGLSEKQLQMWFSHRRRKDRK 3216
6799**********************************************97 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 5554 aa Download sequence |
MVWFGAPEVP DHGMVWSPRG AGPLDGPTTQ GRRTVAWSDV PDAPDDWMVR RPRGDEPRPS 60 PRASPCNDPN TEWHVAPDHF PVWYGESGTP DHVAAVADTA ETPDQDLLCP GGSGTPDHAM 120 AGSGLPKPSE LTMAWPGVAE TPDQSMAWSG LRQTTIWHGP DRSVAWSSAP EPPNHATVQF 180 SVIEVADYAT AWSVVPEPPD HAMLRSGVGE VSEHTMARSG APEPADRAVV WSGVVEAADH 240 TSPEPVNRNM QWSGGAEAPD HTTAWSGVPE PPDHGTPRTG VVEAPEHTMA CHGLASLRRQ 300 SIPWHGLESR SRRTMPCYGL ASWRRRTIPV PEHTVAWPGV PTATKHAIAW SVVLTATKGK 360 QRRSLWDSGS KGDFIHPRVV KEARLPRTGS PSPISVTLGD DKTQRFFDQT VTDLPFFLTL 420 EQTDRSPASR RHCSSAHIDV METRYDFILG TPWSRRFRST EADWATNTLV LKTKCGQTYR 480 VPFIGTTATP RPDPPPPEPS VPTPSPSITV TSPRQFAHFI RQDDVTFFMV NVTDLLHYDP 540 PCPDAELLPL EPDPPSISMT LISTFVPPPS VESTLPSRAD ADAEELAQYT ADLELAIRDL 600 IREYHDVFPS SFSLSIPEAT ELKRQLEELL RLGFIKPSNS PWGAPVLFAR KADGTLRLCI 660 DYRSLDRYTV KNSYPMPRFD ELFDRLAGNC FFTKIDLCSG YHQIRVAAAD QPKTAFRSHF 720 GHYEFTVMPF GLTNAPATFK RAMNDILRDI LEQYVLVYLD DILVYSRTLE EHLRHLRDIL 780 DRLRRHGFYA KLSKCRFAQH KVDFLGHYVS HQGLHMDDVK ITAIAEWPAP TSAKQLRSFL 840 GLTSYYSGQS DEERKRGKGR GRREGGGGGG GGGGGGGGLG GGGGGLGGGG GGGGLGGEGG 900 EGGVGVRVRV HGTTVVPLSS LRGSGVVKAP DHWMVRCRRS AGPSTRHVVA AADTAHPTVA 960 AAAAVGADAV AAAAGAPVGS HCWCSCCAPV FPPMVRRRRG ARPSDGPASS RRWTIEASVT 1020 AAADAAHPTV AAAAAVGVAA VAAAAGAHPT LLCTSLPSDG LASSRCQTIE VSVTTAVDAA 1080 HPTVAAGAVA EAVGAHPTVA DAAHPVEASV TAVADAAHPT VAAGAAIRVD AVVTAAGAPC 1140 GSHCWCSWCA PVFPPMVRRR RGARPSDGTA SSTHRTIEAL VTAAVDATYP TVAAVAAAAG 1200 AHPTVADAAH PIELSVKAAA DAAHPTVAAA AAVGVDAVGV DAVGASAAAL VGSHCWCSCC 1260 APVFPSMVRR RQGARPSSGP ASSRRRTIDA FGTADADAAV PIAVAATAVG GVPAIVTSKQ 1320 GFEDMAQLLC PCLPTKGPAS SRRQTIGWSG VVDKPDHRGI EFLRLQQLLV LIPLLLMLLI 1380 LSRRRSPQLL ILLIPLSLQL LRLELMRLQQ PLVFLLGLTP SAATVPQSSL RWSGVLKAPD 1440 LRVVRRCRGA GPSTRPTQQM QTRLFPLWLP QLLSVLFLLL LSHLSKGSST WQSCCAPVFP 1500 PRVRRSQAAR PSDGPASSRR RTMAASVTAD GDAAHPTVAA AAAVGVAAVA AAAGAHPIIV 1560 DSAHPIEASV TAVADAAHPT VATAVAVGVD AVAAAAGAPS GSHCSCSCCA PVFPPMVRRR 1620 QGARPSSGPA SSRRLSIDAS GTANADAVVP IAVAAAAVGA VPVVVVTSEQ GLEYMAQLLS 1680 PCLPFEGPVS SRRQTIGWSG VVGALDHRGV AVAVGVAAVA AAVGAHPTVA DVAHPIEASV 1740 TIVVDAAYPT VAAADGAPVG SSDGPVSSTR RTIEVSVTAA AHTAHPTVAA VAVLGVAAVA 1800 AAAGAYPTIV DAAHPIEASV TVAGDAAHPT VPAVAAVGVD AVAATTGAHP TVVDAAHPIE 1860 VSVTAAADAP HPTVAAVAAV GVDTVAAAAG AHPTVDDAAH PIEASVTAAA DAAHPTVNAD 1920 AAVGVDVVAA SAGFEYMAQL LCPCLPSEGP ASPTHRTIEE SVTAVVDAAH PTVAAAAAVG 1980 VAAVAAAAGA HPTVADAAHP IKASVTAAAD AAHSTVVAAV VVGVYAVAAA AGVPARSHCW 2040 CSCCASLFPP MVRRRQGARP SGGPASSRRR TIDASGTADA DAAVPTAVAA AAVGVVPAVA 2100 VTSEQGFEYM AQLPLSSLRG SGVVKAPDHR MVRGPAAVGV AEVAATVGAH PTVVDAAHPI 2160 EASVTAVVDA AHPTVVAVGV DAVAAAAVAH PIVADAAHPI EESVTTAVDA THPTVVGAVA 2220 VGVDAVAAAA GALIGSHCWC SSCAPIFPPM VWRRQGARPS DGPASSRRRT IDTCHRADVD 2280 AVVPTMVAAA AVGAVPSVVV TSELQHPRCI NAPFDKSKKK DASQMVMLRP FEFLKRVNCY 2340 KVSNHIMTID NNLQLSTPFV PFDCDLGDFA DMVRRHKLQE MGQAVLRTTV SVNWPKAVGK 2400 SCGEPKTSAR MSKSGAASTQ AKSVSKSASL LQPKGVSATR APSHAECVAR VSLTSTGGAT 2460 DHEDDDENTE EDSHFRQWDG GRWPDGNDAK DTEGDDVEQR FRDDAHDEEG SLEDGLAEGD 2520 GSEGQEDGGH EGHGSEEEEN EDASDEDAAK REDSYGGGSE GDEGGADDDD GGNDGSQKRR 2580 EQSSRATSHD GPAEDDDVLH GTQSGGSTRL VAAKSSAAHK WGVHSWKARV VYFDDDHLEG 2640 YAYISTFDNT RETRAIPLLF RMVVTAIRGL WQSMKEPKDD WHQAKTVEER TAQRDQYQEF 2700 VWKVIRMTPD TSLRKRSLAK RFVRNWSNLL RPYMCLAASG RVVWNLVEKF FDKWEKGELP 2760 GQDGVRPVDQ EGKAGEAAGP GPAAKTVKGK KVLVHYLQSN KNSSGFYICI NDPPASAWKV 2820 FGDFTSREKE MALEKILARH IVVTSRRAFV KKQMNMQDLY VEEETEDEEI DLLLSGAHHN 2880 AMREETPSLS TLGGQQAMKE DVGGTVESTR TENVMRGTTP NTGGAREGST SKCGMKEATP 2940 GFVSLVRRVR NDIEGAADGE TQNVVHADKE SEDGPDGMDI EDDPLFHIPD DVSKQLAPGD 3000 NISYAMKEMK AGPHFLDIKY KESHEHEWGH HIAQGTDEAI RERSVHEKEG GNGLVHMECT 3060 GPGTQIVSES TMAEMRADLE GVSTAEHKKV PSTGNRERGE ENEKEEEAIK SRSVINLVDQ 3120 SGYGTVSSSW RRGERGVIPK TLGQGGGRGG GAGVRETGRV HKKMMKTPAQ KEVLERYYAE 3180 DKYPTDTVRA ELATQLGLSE KQLQMWFSHR RRKDRKEECR DDLPMGPTIG VPSRPTSGNF 3240 NCSRPSHPSH TTYANQPQQQ HQIPIQQQQL PPSAAAQQQQ QQQQHYPRQH NHCGGVAPLP 3300 PPLPPTPAAP SLSPFSTHRS PLRASPVGED YPSLVLGSEA RESNLPPPSN NYLAEYEEEA 3360 LEMDPSAGRG RRGAGGGGGG GGGGGGSGGV GNAVMPPPVT PPAAARPRLS SMPRRVSGVA 3420 GIGIGGGGIS AGAGAGVGVG VGVSGVGVGV GAVVGGVGGG SVGGGAGGGA VVGKVGGSLK 3480 RRTSSQQQQP QQMLTDNQQD QAMAGPSPLA RDLEDGAARV AAERAAIAAV EAQMPEPLRP 3540 DGPPLAVEFD PLPLGAFSFI SASGAAASAL GPDSKKRKVL SKKPEGLPNE DHDPRERKDA 3600 KPAAAVKGVA QALPNNKVVS PVPPLANSTA PPPAPPLKKV PLSQPPGRGV GGMGPSLGKA 3660 LVRTTHQTPS GSLVAPGKGS GLSSLTPPSP SMPPPPLAPP SLPPPPPHLP PSSAHPSTYG 3720 SDFVHDPASA DQGFPNVAME HGGYYNSSGY GPGPDHPYSH GAADMQLSRS PHLREAQGEE 3780 YMSPSSQDLY NGQYRTVQGA LHRAGPPGQY GVGGGGARQL PLPQASGGTP PGHGLGVGGV 3840 GLGGVDMQGV GAGGRPVGVG RMRGVGVAIG GGAGGGMASM VLGRGRGGGR GRGGRGGGRG 3900 GYGDEGTEDG IISAREMMPV GLSPTHSTVA LTTVPMGGQA GAAGIQIDDA AIAAMSHQAA 3960 MEAHAKRQAA AAEKLRQMEL QEQIRLERKR KLEEQRLLKE EEAREKRAKR ELDRAVIARR 4020 KLEEQARREE ERLEREKKRE QERIVRERLK EEERVERERR RELERLEREK QKEVVRVEKE 4080 KKKEELRLQR EEAKVRLAKE KALAKKAARE AADLVEDDYL ERQEAARARG LPYGDDADLD 4140 NVVLPERFPP DCVLMKQPLA LPPWDESQEL VGHLFMCWSF VTTFADVLGI WPFTLDELAE 4200 ALHDHDSRLL GEVHLALLKT ICSDLEEAAR SAAASVPGGA GVVSTTAAVG HPVLEEIQAW 4260 GFNLTTWHLR LNALTWPEVL RQYALAAGFG PKRKKPAPRC EVLDGDEESD GEDALGLLRS 4320 GAAVRAAAQH VLGRKARMLQ AQRRLPGRLT PGTVKYAAYQ VLSVVGQEGL TVPDIAERIQ 4380 NSGLRDLRTS RTPEATIAGA LSRDPIFVKV APSRYCVKAC FRRADEDVEK GEDIVKGEGE 4440 GYGDDYEEGD DEGDAETEVD GDEDGSEDGD VVDEDDGGEE RDGSVDYRKM RNNRSLYMGS 4500 LKTAEQEREV IGNEDAELEH REFERPGRRL CEEETAERLT HDEGDLEDEL TREGSLQRNR 4560 AEQGRTDECE EAENNRDSVG EGCEVDETDL GEPWVQALME GEYSELSVEE RMNALLALVN 4620 AVNEGSLLRS ALEDRHEAAA ALRRQMWAEG QAERRRQKEA QYAKLQAIAS GERPGTPGAD 4680 SDGGGRPMAK GGGGSGDEAA HADDYMHGSG VADTGHGPFE KARARMRADI VERADEAYAI 4740 RMRPLGRDRR FNRYFRLVPC GAGECDKGWG RIFYESFKDS HWKVIDTEEA FDALLRSLDT 4800 RGMREAALHR ALLRHESKIR QAMRNEYGGK TTGAGRGKGG AVVVIKKEDR EEEDPREKCG 4860 GEQEGVGEGW KSGAVKIPPA HEVDRRCAWE KFEELERWMS DVRTRASAVL AADEIPRDAK 4920 GVAPDRGTRC DYCQELVRVK EDRHCPHCHQ TFDRAMMPRM LPKVFAEHLR DCEHRMKTGD 4980 PSWVQLGPPF RPPPQLQKLK AELMDVEAAI PVEAVDLNWY KHDRPSWAVQ LKRAATPKEL 5040 LQVLAELENV VQRDWLSDDF KPTWEVLCDI NQTQKHDGSV WANDISAKAG PDVAILPWIP 5100 HTSSAVALRI WSFDAALLYR KDDCLPGMEH EQEAEDRGKT ANEVEVKRVE TKKSKPASAS 5160 GRGAPRTAPM ASGGAHHTGA SGGGSGRGGG AGGRGGRGGR GGGGGRWRRQ GGRGAQGGRG 5220 GEGIARGGRG TGRVEEGTRA SGRGRGRGGR GGGRGRGGWR RGGRKKAEDG HRIIATAYRR 5280 DTTRVLGRQG HANHRQVDPR LRAGNLRSEL HRSGDQSDEE EEADRLDAGG ESPDYDRAND 5340 GQDVGEASEE QQVDDDERDG EEEEGDDEEE DEEDVLVGHD DLDDEAGSAD EDDNEEDREG 5400 GMDDEDREDD DDLEEGEEGS EREEEEEEEE MEEEEEEEEE EVDGLEDEGE DHHGMDEGYG 5460 EIGKHEYMEG PEEEEDYDEN EEDHVGREMA DPLEHDEEDD MDDEMEDELD GDNIEVAGGH 5520 SGHRNGEYPS PGDRSEGTPS IGDDYEDDDE FDDR |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 3210 | 3217 | RRRKDRKE |
| 2 | 3575 | 3601 | KKRKVLSKKPEGLPNEDHDPRERKDAK |
| 3 | 3890 | 3900 | RGRGGRGGGRG |
| 4 | 3892 | 3902 | RGRGGRGGGRG |
| 5 | 5195 | 5203 | GGRGGRGGG |
| 6 | 5197 | 5206 | RGGRGGGGGR |
| 7 | 5198 | 5206 | GGRGGRGGG |
| 8 | 5239 | 5249 | RGRGGRGGGRG |
| 9 | 5245 | 5255 | RGRGGRGGGRG |
| 10 | 5247 | 5257 | RGRGGRGGGRG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G44180.2 | 3e-74 | HB-other family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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